Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_761

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_760 and Pf1N1B4_761 are separated by 134 nucleotidesPf1N1B4_761 and Pf1N1B4_762 are separated by 403 nucleotides Pf1N1B4_760 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 863,239 to 865,344 _760 Pf1N1B4_761 - FIG00954879: hypothetical protein, at 865,479 to 865,769 _761 Pf1N1B4_762 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 866,173 to 867,096 _762 Position (kb) 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 864.630 kb on + strand, within Pf1N1B4_760at 864.630 kb on + strand, within Pf1N1B4_760at 864.630 kb on + strand, within Pf1N1B4_760at 864.631 kb on - strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.887 kb on + strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strandat 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.888 kb on - strand, within Pf1N1B4_760at 864.974 kb on + strand, within Pf1N1B4_760at 864.974 kb on + strand, within Pf1N1B4_760at 864.975 kb on - strand, within Pf1N1B4_760at 864.975 kb on - strandat 864.998 kb on + strand, within Pf1N1B4_760at 864.998 kb on + strand, within Pf1N1B4_760at 864.999 kb on - strand, within Pf1N1B4_760at 865.026 kb on - strand, within Pf1N1B4_760at 865.110 kb on + strand, within Pf1N1B4_760at 865.111 kb on - strand, within Pf1N1B4_760at 865.255 kb on + strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.398 kb on - strandat 865.727 kb on + strandat 865.728 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.738 kb on - strand, within Pf1N1B4_761at 865.747 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.801 kb on - strandat 865.804 kb on + strandat 865.804 kb on + strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.941 kb on + strandat 865.942 kb on - strandat 865.951 kb on + strandat 866.052 kb on + strandat 866.098 kb on + strandat 866.128 kb on - strandat 866.143 kb on + strandat 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.674 kb on + strand, within Pf1N1B4_762at 866.675 kb on - strand, within Pf1N1B4_762at 866.675 kb on - strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.676 kb on + strand, within Pf1N1B4_762at 866.677 kb on - strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strandat 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.678 kb on + strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.679 kb on - strand, within Pf1N1B4_762at 866.714 kb on + strand, within Pf1N1B4_762

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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864,630 + Pf1N1B4_760 0.66 -0.0
864,630 + Pf1N1B4_760 0.66 -0.0
864,630 + Pf1N1B4_760 0.66 -0.0
864,631 - Pf1N1B4_760 0.66 -0.9
864,887 + Pf1N1B4_760 0.78 -1.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -1.6
864,887 + Pf1N1B4_760 0.78 -1.9
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -0.8
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,887 + Pf1N1B4_760 0.78 -0.0
864,888 - Pf1N1B4_760 0.78 -0.0
864,888 - -0.0
864,888 - Pf1N1B4_760 0.78 -1.5
864,888 - Pf1N1B4_760 0.78 -1.4
864,888 - Pf1N1B4_760 0.78 -0.0
864,974 + Pf1N1B4_760 0.82 -2.3
864,974 + Pf1N1B4_760 0.82 -0.0
864,975 - Pf1N1B4_760 0.82 -0.0
864,975 - -0.0
864,998 + Pf1N1B4_760 0.84 -3.2
864,998 + Pf1N1B4_760 0.84 -0.0
864,999 - Pf1N1B4_760 0.84 -0.0
865,026 - Pf1N1B4_760 0.85 -0.0
865,110 + Pf1N1B4_760 0.89 -0.0
865,111 - Pf1N1B4_760 0.89 -0.0
865,255 + -0.0
865,398 - -0.0
865,398 - -1.5
865,398 - -1.0
865,398 - -0.0
865,727 + -0.0
865,728 - Pf1N1B4_761 0.86 -1.0
865,738 - Pf1N1B4_761 0.89 -0.0
865,738 - Pf1N1B4_761 0.89 -3.3
865,738 - Pf1N1B4_761 0.89 -2.5
865,738 - Pf1N1B4_761 0.89 -1.8
865,747 - -0.0
865,801 - -0.0
865,801 - -1.0
865,801 - -2.0
865,801 - -1.9
865,801 - -0.0
865,801 - -0.0
865,804 + -2.0
865,804 + -0.0
865,805 - -0.0
865,805 - -1.2
865,805 - -0.0
865,805 - -1.6
865,941 + -1.5
865,941 + -2.7
865,941 + -0.0
865,942 - -0.0
865,951 + -0.0
866,052 + -0.0
866,098 + -0.0
866,128 - -0.0
866,143 + -0.0
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 -1.5
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 -0.0
866,674 + Pf1N1B4_762 0.54 +0.4
866,675 - Pf1N1B4_762 0.54 -0.0
866,675 - Pf1N1B4_762 0.54 -0.0
866,676 + Pf1N1B4_762 0.54 -0.0
866,676 + Pf1N1B4_762 0.54 -2.9
866,676 + Pf1N1B4_762 0.54 -2.8
866,677 - Pf1N1B4_762 0.55 -3.9
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -1.5
866,678 + -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,678 + Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -1.1
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -2.2
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,679 - Pf1N1B4_762 0.55 -0.0
866,714 + Pf1N1B4_762 0.59 -1.0

Or see this region's nucleotide sequence