Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5760 and Pf1N1B4_5761 are separated by 79 nucleotides Pf1N1B4_5761 and Pf1N1B4_5762 are separated by 11 nucleotides Pf1N1B4_5762 and Pf1N1B4_5763 are separated by 43 nucleotides Pf1N1B4_5763 and Pf1N1B4_5764 are separated by 199 nucleotides
Pf1N1B4_5760 - Nitric-oxide reductase subunit C (EC 1.7.99.7), at 200,614 to 201,222
_5760
Pf1N1B4_5761 - Nitric oxide reductase activation protein NorF, at 201,302 to 201,559
_5761
Pf1N1B4_5762 - Nitric oxide reductase activation protein NorE, at 201,571 to 202,098
_5762
Pf1N1B4_5763 - Nitric oxide reductase activation protein NorQ, at 202,142 to 202,933
_5763
Pf1N1B4_5764 - Cytochrome cd1 nitrite reductase (EC:1.7.2.1), at 203,133 to 204,824
_5764
Position (kb) 202
203 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 201.330 kb on - strand, within Pf1N1B4_5761 at 201.633 kb on - strand, within Pf1N1B4_5762 at 201.730 kb on + strand, within Pf1N1B4_5762 at 201.730 kb on + strand, within Pf1N1B4_5762 at 201.731 kb on - strand, within Pf1N1B4_5762 at 201.846 kb on - strand, within Pf1N1B4_5762 at 201.878 kb on + strand, within Pf1N1B4_5762 at 201.878 kb on + strand, within Pf1N1B4_5762 at 201.879 kb on - strand, within Pf1N1B4_5762 at 202.270 kb on + strand, within Pf1N1B4_5763 at 202.501 kb on - strand, within Pf1N1B4_5763 at 202.764 kb on + strand, within Pf1N1B4_5763 at 202.902 kb on + strand at 202.902 kb on + strand at 202.903 kb on - strand at 202.903 kb on - strand at 203.053 kb on - strand at 203.053 kb on - strand at 203.069 kb on - strand at 203.436 kb on + strand, within Pf1N1B4_5764 at 203.437 kb on - strand, within Pf1N1B4_5764 at 203.437 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764 at 203.908 kb on - strand, within Pf1N1B4_5764
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 201,330 - Pf1N1B4_5761 0.11 -1.5 201,633 - Pf1N1B4_5762 0.12 -0.8 201,730 + Pf1N1B4_5762 0.30 +0.0 201,730 + Pf1N1B4_5762 0.30 +0.0 201,731 - Pf1N1B4_5762 0.30 -2.9 201,846 - Pf1N1B4_5762 0.52 -2.3 201,878 + Pf1N1B4_5762 0.58 +0.0 201,878 + Pf1N1B4_5762 0.58 -2.9 201,879 - Pf1N1B4_5762 0.58 +0.0 202,270 + Pf1N1B4_5763 0.16 +0.0 202,501 - Pf1N1B4_5763 0.45 -3.5 202,764 + Pf1N1B4_5763 0.79 +0.0 202,902 + -3.1 202,902 + -3.8 202,903 - -2.7 202,903 - -6.1 203,053 - +0.0 203,053 - +0.0 203,069 - +0.0 203,436 + Pf1N1B4_5764 0.18 -1.5 203,437 - Pf1N1B4_5764 0.18 -0.7 203,437 - Pf1N1B4_5764 0.18 -2.2 203,908 - Pf1N1B4_5764 0.46 +0.0 203,908 - Pf1N1B4_5764 0.46 +0.0 203,908 - Pf1N1B4_5764 0.46 -2.1
Or see this region's nucleotide sequence