Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5749 and Pf1N1B4_5750 are separated by 240 nucleotides Pf1N1B4_5750 and Pf1N1B4_5751 are separated by 78 nucleotides Pf1N1B4_5751 and Pf1N1B4_5752 are separated by 154 nucleotides Pf1N1B4_5752 and Pf1N1B4_5753 are separated by 75 nucleotides
Pf1N1B4_5749 - Molybdenum cofactor biosynthesis protein MoaB, at 189,990 to 190,544
_5749
Pf1N1B4_5750 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 190,785 to 191,432
_5750
Pf1N1B4_5751 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 191,511 to 193,040
_5751
Pf1N1B4_5752 - Nitric oxide-dependent regulator DnrN or NorA, at 193,195 to 193,869
_5752
Pf1N1B4_5753 - putative membrane protein, at 193,945 to 194,382
_5753
Position (kb) 191
192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 190.624 kb on - strand at 190.640 kb on - strand at 190.773 kb on + strand at 190.813 kb on - strand at 190.813 kb on - strand at 191.057 kb on - strand, within Pf1N1B4_5750 at 191.188 kb on + strand, within Pf1N1B4_5750 at 191.189 kb on - strand, within Pf1N1B4_5750 at 191.399 kb on - strand at 191.681 kb on + strand, within Pf1N1B4_5751 at 191.852 kb on + strand, within Pf1N1B4_5751 at 191.854 kb on + strand at 191.854 kb on + strand, within Pf1N1B4_5751 at 191.855 kb on - strand, within Pf1N1B4_5751 at 192.014 kb on - strand, within Pf1N1B4_5751 at 192.320 kb on + strand, within Pf1N1B4_5751 at 192.321 kb on - strand at 192.327 kb on + strand, within Pf1N1B4_5751 at 192.438 kb on + strand at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.694 kb on + strand, within Pf1N1B4_5751 at 192.695 kb on - strand, within Pf1N1B4_5751 at 192.763 kb on + strand, within Pf1N1B4_5751 at 192.952 kb on + strand at 192.953 kb on - strand at 193.044 kb on - strand at 193.044 kb on - strand at 193.047 kb on - strand at 193.047 kb on - strand at 193.058 kb on - strand at 193.755 kb on + strand, within Pf1N1B4_5752 at 193.942 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 190,624 - +0.0 190,640 - -2.6 190,773 + +0.0 190,813 - +0.0 190,813 - +0.0 191,057 - Pf1N1B4_5750 0.42 +0.0 191,188 + Pf1N1B4_5750 0.62 +0.0 191,189 - Pf1N1B4_5750 0.62 -1.7 191,399 - +0.0 191,681 + Pf1N1B4_5751 0.11 -3.1 191,852 + Pf1N1B4_5751 0.22 +0.0 191,854 + -4.0 191,854 + Pf1N1B4_5751 0.22 -3.2 191,855 - Pf1N1B4_5751 0.22 -2.8 192,014 - Pf1N1B4_5751 0.33 +0.0 192,320 + Pf1N1B4_5751 0.53 +0.0 192,321 - +0.0 192,327 + Pf1N1B4_5751 0.53 +0.0 192,438 + +0.0 192,694 + Pf1N1B4_5751 0.77 +0.0 192,694 + Pf1N1B4_5751 0.77 +0.0 192,694 + Pf1N1B4_5751 0.77 -1.5 192,695 - Pf1N1B4_5751 0.77 -2.7 192,763 + Pf1N1B4_5751 0.82 -3.5 192,952 + -3.3 192,953 - +0.0 193,044 - +0.0 193,044 - +0.0 193,047 - +0.0 193,047 - +0.0 193,058 - +0.0 193,755 + Pf1N1B4_5752 0.83 +0.0 193,942 + -1.9
Or see this region's nucleotide sequence