Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5567

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5566 and Pf1N1B4_5567 overlap by 49 nucleotidesPf1N1B4_5567 and Pf1N1B4_5568 are separated by 31 nucleotidesPf1N1B4_5568 and Pf1N1B4_5569 are separated by 167 nucleotides Pf1N1B4_5566 - putative replication protein (repA-like), at 338,147 to 339,406 _5566 Pf1N1B4_5567 - transcriptional regulator MvaT, P16 subunit, putative, at 339,358 to 339,717 _5567 Pf1N1B4_5568 - hypothetical protein, at 339,749 to 340,165 _5568 Pf1N1B4_5569 - hypothetical protein, at 340,333 to 340,686 _5569 Position (kb) 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1at 338.367 kb on + strand, within Pf1N1B4_5566at 338.368 kb on - strandat 338.368 kb on - strand, within Pf1N1B4_5566at 338.372 kb on - strand, within Pf1N1B4_5566at 338.372 kb on - strandat 338.524 kb on - strand, within Pf1N1B4_5566at 338.529 kb on + strand, within Pf1N1B4_5566at 338.530 kb on - strand, within Pf1N1B4_5566at 338.622 kb on + strand, within Pf1N1B4_5566at 338.629 kb on + strand, within Pf1N1B4_5566at 338.663 kb on - strand, within Pf1N1B4_5566at 338.666 kb on + strand, within Pf1N1B4_5566at 338.666 kb on + strandat 338.667 kb on - strand, within Pf1N1B4_5566at 338.708 kb on + strand, within Pf1N1B4_5566at 338.708 kb on + strand, within Pf1N1B4_5566at 338.815 kb on - strand, within Pf1N1B4_5566at 338.816 kb on + strand, within Pf1N1B4_5566at 338.817 kb on - strand, within Pf1N1B4_5566at 338.817 kb on - strand, within Pf1N1B4_5566at 338.817 kb on - strandat 338.861 kb on - strand, within Pf1N1B4_5566at 338.862 kb on + strand, within Pf1N1B4_5566at 338.862 kb on + strand, within Pf1N1B4_5566at 338.891 kb on + strandat 338.892 kb on - strand, within Pf1N1B4_5566at 338.984 kb on + strand, within Pf1N1B4_5566at 338.984 kb on + strand, within Pf1N1B4_5566at 338.984 kb on + strandat 339.012 kb on + strand, within Pf1N1B4_5566at 339.012 kb on + strandat 339.012 kb on + strandat 339.022 kb on + strand, within Pf1N1B4_5566at 339.105 kb on + strand, within Pf1N1B4_5566at 339.105 kb on + strand, within Pf1N1B4_5566at 339.106 kb on - strand, within Pf1N1B4_5566at 339.290 kb on + strandat 339.290 kb on + strandat 339.291 kb on - strandat 339.307 kb on + strandat 339.307 kb on + strandat 339.308 kb on - strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.310 kb on + strandat 339.317 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.320 kb on + strandat 339.353 kb on + strandat 339.353 kb on + strandat 339.353 kb on + strandat 339.354 kb on - strandat 339.402 kb on - strandat 339.448 kb on + strand, within Pf1N1B4_5567at 339.449 kb on - strand, within Pf1N1B4_5567at 339.482 kb on + strand, within Pf1N1B4_5567at 339.482 kb on + strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.483 kb on - strand, within Pf1N1B4_5567at 339.499 kb on + strand, within Pf1N1B4_5567at 339.654 kb on + strand, within Pf1N1B4_5567at 339.711 kb on - strandat 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strand, within Pf1N1B4_5568at 339.897 kb on + strandat 339.898 kb on - strand, within Pf1N1B4_5568at 339.898 kb on - strand, within Pf1N1B4_5568at 339.898 kb on - strand, within Pf1N1B4_5568at 340.165 kb on + strandat 340.165 kb on + strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.235 kb on - strandat 340.294 kb on + strandat 340.294 kb on + strandat 340.312 kb on - strandat 340.329 kb on - strandat 340.329 kb on - strandat 340.329 kb on - strandat 340.600 kb on + strand, within Pf1N1B4_5569at 340.601 kb on - strand, within Pf1N1B4_5569at 340.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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338,367 + Pf1N1B4_5566 0.17 -1.4
338,368 - -0.0
338,368 - Pf1N1B4_5566 0.18 -0.0
338,372 - Pf1N1B4_5566 0.18 -0.0
338,372 - -2.0
338,524 - Pf1N1B4_5566 0.30 -1.9
338,529 + Pf1N1B4_5566 0.30 -0.0
338,530 - Pf1N1B4_5566 0.30 -1.3
338,622 + Pf1N1B4_5566 0.38 -2.0
338,629 + Pf1N1B4_5566 0.38 -0.0
338,663 - Pf1N1B4_5566 0.41 -0.0
338,666 + Pf1N1B4_5566 0.41 -0.0
338,666 + -0.0
338,667 - Pf1N1B4_5566 0.41 -0.0
338,708 + Pf1N1B4_5566 0.45 -0.0
338,708 + Pf1N1B4_5566 0.45 -0.0
338,815 - Pf1N1B4_5566 0.53 -0.0
338,816 + Pf1N1B4_5566 0.53 -2.2
338,817 - Pf1N1B4_5566 0.53 -0.0
338,817 - Pf1N1B4_5566 0.53 -0.0
338,817 - -0.0
338,861 - Pf1N1B4_5566 0.57 -0.0
338,862 + Pf1N1B4_5566 0.57 -1.7
338,862 + Pf1N1B4_5566 0.57 -0.0
338,891 + -0.9
338,892 - Pf1N1B4_5566 0.59 -0.0
338,984 + Pf1N1B4_5566 0.66 -0.0
338,984 + Pf1N1B4_5566 0.66 -0.0
338,984 + -1.3
339,012 + Pf1N1B4_5566 0.69 -0.0
339,012 + -1.5
339,012 + -0.0
339,022 + Pf1N1B4_5566 0.69 -0.0
339,105 + Pf1N1B4_5566 0.76 -0.0
339,105 + Pf1N1B4_5566 0.76 -0.0
339,106 - Pf1N1B4_5566 0.76 -0.0
339,290 + -1.5
339,290 + -0.6
339,291 - -3.3
339,307 + -0.0
339,307 + -0.0
339,308 - -1.4
339,310 + -0.9
339,310 + -0.0
339,310 + -1.6
339,310 + -0.0
339,317 + -0.0
339,320 + -0.0
339,320 + -1.7
339,320 + -0.9
339,320 + -2.2
339,353 + -0.0
339,353 + -0.0
339,353 + -0.0
339,354 - -2.4
339,402 - -0.0
339,448 + Pf1N1B4_5567 0.25 -0.0
339,449 - Pf1N1B4_5567 0.25 -0.0
339,482 + Pf1N1B4_5567 0.34 -2.5
339,482 + Pf1N1B4_5567 0.34 -2.5
339,483 - Pf1N1B4_5567 0.35 -0.0
339,483 - Pf1N1B4_5567 0.35 -0.0
339,483 - Pf1N1B4_5567 0.35 -1.7
339,483 - Pf1N1B4_5567 0.35 -2.6
339,499 + Pf1N1B4_5567 0.39 -2.7
339,654 + Pf1N1B4_5567 0.82 -0.0
339,711 - -0.0
339,897 + Pf1N1B4_5568 0.35 -1.0
339,897 + Pf1N1B4_5568 0.35 -0.0
339,897 + Pf1N1B4_5568 0.35 -0.0
339,897 + -2.1
339,898 - Pf1N1B4_5568 0.36 -1.0
339,898 - Pf1N1B4_5568 0.36 -0.7
339,898 - Pf1N1B4_5568 0.36 -0.0
340,165 + -0.0
340,165 + -3.1
340,235 - -0.0
340,235 - -0.0
340,235 - -2.9
340,235 - -2.0
340,294 + -1.9
340,294 + -0.0
340,312 - -1.2
340,329 - -1.6
340,329 - -0.9
340,329 - -0.0
340,600 + Pf1N1B4_5569 0.75 -0.0
340,601 - Pf1N1B4_5569 0.76 -0.0
340,657 - -0.6

Or see this region's nucleotide sequence