Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5483

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5482 and Pf1N1B4_5483 are separated by 865 nucleotidesPf1N1B4_5483 and Pf1N1B4_5484 are separated by 397 nucleotides Pf1N1B4_5482 - hypothetical protein, at 232,189 to 232,308 _5482 Pf1N1B4_5483 - hypothetical protein, at 233,174 to 233,398 _5483 Pf1N1B4_5484 - hypothetical protein, at 233,796 to 233,912 _5484 Position (kb) 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 232.375 kb on - strandat 232.461 kb on - strandat 232.465 kb on - strandat 232.465 kb on - strandat 232.465 kb on - strandat 232.465 kb on - strandat 232.465 kb on - strandat 232.664 kb on + strandat 232.664 kb on + strandat 232.664 kb on + strandat 232.665 kb on - strandat 232.665 kb on - strandat 232.665 kb on - strandat 232.665 kb on - strandat 232.665 kb on - strandat 232.673 kb on + strandat 232.674 kb on - strandat 232.674 kb on - strandat 232.733 kb on + strandat 232.759 kb on + strandat 232.759 kb on + strandat 232.760 kb on - strandat 232.760 kb on - strandat 232.784 kb on + strandat 232.828 kb on + strandat 232.829 kb on - strandat 232.843 kb on - strandat 232.843 kb on - strandat 232.862 kb on - strandat 232.950 kb on + strandat 232.950 kb on + strandat 232.950 kb on + strandat 232.964 kb on + strandat 233.061 kb on - strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.069 kb on + strandat 233.073 kb on + strandat 233.073 kb on + strandat 233.073 kb on + strandat 233.073 kb on + strandat 233.073 kb on + strandat 233.074 kb on - strandat 233.074 kb on - strandat 233.074 kb on - strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.117 kb on + strandat 233.123 kb on + strandat 233.123 kb on + strandat 233.123 kb on + strandat 233.123 kb on + strandat 233.123 kb on + strandat 233.124 kb on - strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.165 kb on + strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.166 kb on - strandat 233.277 kb on + strand, within Pf1N1B4_5483at 233.277 kb on + strand, within Pf1N1B4_5483at 233.277 kb on + strandat 233.277 kb on + strand, within Pf1N1B4_5483at 233.278 kb on - strand, within Pf1N1B4_5483at 233.351 kb on + strand, within Pf1N1B4_5483at 233.417 kb on + strandat 233.462 kb on + strandat 233.462 kb on + strandat 233.462 kb on + strandat 233.467 kb on + strandat 233.467 kb on + strandat 233.467 kb on + strandat 233.468 kb on - strandat 233.558 kb on - strandat 233.657 kb on - strandat 233.657 kb on - strandat 233.657 kb on - strandat 233.657 kb on - strandat 233.657 kb on - strandat 233.665 kb on + strandat 233.665 kb on + strandat 233.666 kb on - strandat 233.741 kb on + strandat 233.741 kb on + strandat 233.741 kb on + strandat 233.741 kb on + strandat 233.741 kb on + strandat 233.742 kb on - strandat 233.742 kb on - strandat 233.742 kb on - strandat 233.782 kb on + strandat 233.782 kb on + strandat 233.782 kb on + strandat 233.782 kb on + strandat 233.782 kb on + strandat 233.782 kb on + strandat 233.783 kb on - strandat 233.783 kb on - strandat 233.783 kb on - strandat 233.786 kb on + strandat 233.786 kb on + strandat 233.786 kb on + strandat 233.786 kb on + strandat 233.787 kb on - strandat 233.787 kb on - strandat 233.787 kb on - strandat 233.909 kb on - strandat 234.021 kb on - strandat 234.114 kb on + strandat 234.115 kb on - strandat 234.115 kb on - strandat 234.115 kb on - strandat 234.121 kb on + strandat 234.121 kb on + strandat 234.121 kb on + strandat 234.122 kb on - strandat 234.122 kb on - strandat 234.159 kb on - strandat 234.168 kb on + strandat 234.169 kb on - strandat 234.169 kb on - strandat 234.233 kb on + strandat 234.394 kb on + strandat 234.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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232,375 - -1.7
232,461 - -1.3
232,465 - -0.0
232,465 - -0.0
232,465 - -2.6
232,465 - -0.2
232,465 - -0.0
232,664 + -2.7
232,664 + -0.0
232,664 + -0.0
232,665 - -2.3
232,665 - -0.0
232,665 - -0.0
232,665 - -0.0
232,665 - -1.4
232,673 + -1.3
232,674 - -1.5
232,674 - -0.0
232,733 + -0.0
232,759 + -0.0
232,759 + -1.2
232,760 - -0.0
232,760 - -0.0
232,784 + -0.0
232,828 + -0.0
232,829 - -0.0
232,843 - -0.0
232,843 - -0.0
232,862 - -2.2
232,950 + -1.2
232,950 + -0.0
232,950 + -0.0
232,964 + -0.0
233,061 - -1.3
233,069 + -0.0
233,069 + -0.0
233,069 + -0.0
233,069 + -0.0
233,069 + -1.7
233,069 + -0.0
233,069 + -0.9
233,069 + -2.1
233,073 + -0.0
233,073 + -0.0
233,073 + -0.0
233,073 + -1.5
233,073 + -0.0
233,074 - -1.5
233,074 - -0.0
233,074 - -1.5
233,117 + -1.6
233,117 + -0.0
233,117 + -0.0
233,117 + -0.0
233,117 + -0.0
233,117 + -0.0
233,117 + -1.7
233,117 + -1.0
233,117 + -0.0
233,117 + -1.5
233,117 + -0.0
233,117 + -0.0
233,123 + -1.3
233,123 + -0.0
233,123 + -0.0
233,123 + -0.0
233,123 + -0.0
233,124 - -3.3
233,165 + -0.0
233,165 + -2.7
233,165 + -0.0
233,165 + -0.0
233,165 + -1.2
233,165 + -1.1
233,165 + -1.8
233,165 + -0.0
233,165 + -2.8
233,165 + -1.6
233,165 + -4.1
233,165 + -0.0
233,165 + -0.0
233,165 + -0.0
233,165 + -0.0
233,165 + -0.0
233,165 + -0.9
233,165 + -2.9
233,165 + -0.0
233,166 - -2.1
233,166 - -0.0
233,166 - -0.0
233,166 - -0.0
233,166 - -0.0
233,166 - -0.0
233,166 - -0.0
233,166 - -0.0
233,166 - -2.2
233,277 + Pf1N1B4_5483 0.46 -2.3
233,277 + Pf1N1B4_5483 0.46 -0.0
233,277 + -0.0
233,277 + Pf1N1B4_5483 0.46 -2.6
233,278 - Pf1N1B4_5483 0.46 -0.0
233,351 + Pf1N1B4_5483 0.79 -2.3
233,417 + -0.0
233,462 + -2.1
233,462 + -2.8
233,462 + -0.0
233,467 + -2.5
233,467 + -0.0
233,467 + -1.2
233,468 - -0.0
233,558 - -1.8
233,657 - -0.0
233,657 - -0.0
233,657 - -0.0
233,657 - -2.3
233,657 - -0.0
233,665 + -1.7
233,665 + -0.0
233,666 - -0.0
233,741 + -0.8
233,741 + -0.0
233,741 + -0.0
233,741 + -0.0
233,741 + -0.0
233,742 - -3.0
233,742 - -0.0
233,742 - +2.3
233,782 + -0.0
233,782 + -0.0
233,782 + -0.0
233,782 + -0.8
233,782 + -1.8
233,782 + -0.0
233,783 - -1.5
233,783 - -0.0
233,783 - -0.0
233,786 + -0.0
233,786 + -0.0
233,786 + -1.5
233,786 + -0.0
233,787 - -0.0
233,787 - -1.3
233,787 - -0.0
233,909 - -0.0
234,021 - -1.6
234,114 + -0.0
234,115 - -2.3
234,115 - -0.7
234,115 - -1.2
234,121 + -0.0
234,121 + -1.3
234,121 + -0.0
234,122 - -2.3
234,122 - -0.0
234,159 - -0.0
234,168 + -2.9
234,169 - -0.0
234,169 - -0.0
234,233 + -1.7
234,394 + -0.0
234,398 - -0.0

Or see this region's nucleotide sequence