Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4782 and Pf1N1B4_4783 are separated by 157 nucleotides Pf1N1B4_4783 and Pf1N1B4_4784 are separated by 254 nucleotides
Pf1N1B4_4782 - CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8), at 5,283,059 to 5,284,402
_4782
Pf1N1B4_4783 - Transcriptional regulator, AraC family, at 5,284,560 to 5,285,576
_4783
Pf1N1B4_4784 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases, at 5,285,831 to 5,287,495
_4784
Position (kb) 5284
5285
5286 Strain fitness (log2 ratio) -2
-1
0
1 at 5283.722 kb on + strand, within Pf1N1B4_4782 at 5283.723 kb on - strand, within Pf1N1B4_4782 at 5284.010 kb on + strand, within Pf1N1B4_4782 at 5284.112 kb on + strand, within Pf1N1B4_4782 at 5284.113 kb on - strand, within Pf1N1B4_4782 at 5284.113 kb on - strand, within Pf1N1B4_4782 at 5284.475 kb on + strand at 5284.519 kb on + strand at 5284.519 kb on + strand at 5284.520 kb on - strand at 5284.714 kb on - strand, within Pf1N1B4_4783 at 5284.974 kb on + strand, within Pf1N1B4_4783 at 5284.974 kb on + strand, within Pf1N1B4_4783 at 5284.975 kb on - strand at 5284.984 kb on - strand, within Pf1N1B4_4783 at 5285.385 kb on + strand, within Pf1N1B4_4783 at 5285.385 kb on + strand, within Pf1N1B4_4783 at 5285.385 kb on + strand, within Pf1N1B4_4783 at 5285.502 kb on + strand at 5285.502 kb on + strand at 5285.531 kb on + strand at 5285.574 kb on + strand at 5285.574 kb on + strand at 5285.574 kb on + strand at 5285.697 kb on + strand at 5285.697 kb on + strand at 5285.698 kb on - strand at 5285.698 kb on - strand at 5285.698 kb on - strand at 5285.702 kb on - strand at 5285.702 kb on - strand at 5285.788 kb on + strand at 5285.788 kb on + strand at 5285.789 kb on - strand at 5285.789 kb on - strand at 5285.804 kb on + strand at 5285.841 kb on - strand at 5285.841 kb on - strand at 5285.867 kb on + strand at 5285.867 kb on + strand at 5286.488 kb on + strand at 5286.566 kb on + strand, within Pf1N1B4_4784 at 5286.566 kb on + strand, within Pf1N1B4_4784 at 5286.567 kb on - strand, within Pf1N1B4_4784
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 5,283,722 + Pf1N1B4_4782 0.49 +0.0 5,283,723 - Pf1N1B4_4782 0.49 -2.3 5,284,010 + Pf1N1B4_4782 0.71 +0.0 5,284,112 + Pf1N1B4_4782 0.78 +0.0 5,284,113 - Pf1N1B4_4782 0.78 +0.0 5,284,113 - Pf1N1B4_4782 0.78 -2.1 5,284,475 + -2.0 5,284,519 + +0.0 5,284,519 + -2.1 5,284,520 - +0.0 5,284,714 - Pf1N1B4_4783 0.15 -2.1 5,284,974 + Pf1N1B4_4783 0.41 -2.4 5,284,974 + Pf1N1B4_4783 0.41 +0.0 5,284,975 - -2.1 5,284,984 - Pf1N1B4_4783 0.42 +0.0 5,285,385 + Pf1N1B4_4783 0.81 -2.5 5,285,385 + Pf1N1B4_4783 0.81 +0.0 5,285,385 + Pf1N1B4_4783 0.81 -2.5 5,285,502 + +1.0 5,285,502 + -0.5 5,285,531 + -2.3 5,285,574 + +0.0 5,285,574 + +0.0 5,285,574 + +0.0 5,285,697 + -2.5 5,285,697 + -2.0 5,285,698 - +0.0 5,285,698 - -1.3 5,285,698 - -0.8 5,285,702 - -2.6 5,285,702 - -1.6 5,285,788 + +0.0 5,285,788 + -0.8 5,285,789 - -1.2 5,285,789 - +0.0 5,285,804 + -2.6 5,285,841 - -2.2 5,285,841 - +0.0 5,285,867 + +0.0 5,285,867 + +0.0 5,286,488 + -2.0 5,286,566 + Pf1N1B4_4784 0.44 +0.0 5,286,566 + Pf1N1B4_4784 0.44 +0.0 5,286,567 - Pf1N1B4_4784 0.44 -2.6
Or see this region's nucleotide sequence