Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4377

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,833,402	+				+0.0
4,833,402	+		Pf1N1B4_4376	0.30	+0.0
4,833,402	+		Pf1N1B4_4376	0.30	-1.3
4,833,406	+		Pf1N1B4_4376	0.31	-1.7
4,833,406	+		Pf1N1B4_4376	0.31	+0.0
4,833,406	+				-1.4
4,833,407	-		Pf1N1B4_4376	0.31	+0.0
4,833,407	-		Pf1N1B4_4376	0.31	-1.7
4,833,407	-		Pf1N1B4_4376	0.31	-2.6
4,833,407	-		Pf1N1B4_4376	0.31	-4.9
4,834,081	+				+0.0
4,834,082	-				+0.0
4,834,082	-				+0.0
4,834,082	-				-2.4
4,834,115	-				-1.9
4,834,137	-				+0.0
4,834,196	-				+0.0
4,834,203	+				+0.0
4,834,439	+		Pf1N1B4_4377	0.41	+0.0
4,834,440	-		Pf1N1B4_4377	0.41	-1.8
4,834,628	+		Pf1N1B4_4377	0.71	-2.8
4,834,700	+		Pf1N1B4_4377	0.83	-3.0
4,834,701	-		Pf1N1B4_4377	0.83	-2.5
4,834,778	+				-1.5
4,834,779	-				+0.0
4,834,849	+				+0.0
4,834,858	-				-1.5
4,834,922	+				+0.0
4,834,922	+				-2.8
4,834,922	+				-1.0
4,834,954	+				+0.0
4,834,954	+				+0.0
4,834,954	+				+0.0
4,834,954	+				-0.9
4,835,357	+				+0.0
4,835,357	+		Pf1N1B4_4378	0.12	-2.6
4,835,358	-		Pf1N1B4_4378	0.12	-1.4
4,835,358	-		Pf1N1B4_4378	0.12	-4.2
4,835,632	-		Pf1N1B4_4378	0.26	+0.0
4,835,718	-		Pf1N1B4_4378	0.31	+0.0