Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4256

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,717,651	+				-1.7
4,717,651	+				+0.0
4,717,651	+				+0.0
4,717,651	+				-1.4
4,717,652	-				+0.0
4,717,652	-				-3.8
4,717,652	-				+0.0
4,717,856	+		Pf1N1B4_4255	0.24	-1.6
4,717,857	-		Pf1N1B4_4255	0.25	-1.5
4,717,872	+		Pf1N1B4_4255	0.27	-1.5
4,717,872	+		Pf1N1B4_4255	0.27	+0.0
4,717,873	-		Pf1N1B4_4255	0.27	+0.0
4,718,302	+				+0.0
4,718,351	-				+0.0
4,718,351	-				-1.2
4,718,359	+				-0.2
4,718,360	-				+0.0
4,718,360	-				+0.0
4,718,453	+				+0.0
4,718,453	+				-1.2
4,718,454	-				-2.0
4,718,454	-				-0.9
4,718,473	-				+0.0
4,718,497	+				-2.1
4,718,498	-				-1.1
4,718,517	+				+0.0
4,718,518	-				+0.0
4,718,518	-				+0.0
4,718,541	-		Pf1N1B4_4256	0.11	+0.0
4,718,664	+				+0.0
4,718,664	+		Pf1N1B4_4256	0.29	-5.1
4,718,861	-		Pf1N1B4_4256	0.58	+0.0
4,718,862	+		Pf1N1B4_4256	0.58	-2.2
4,718,863	-		Pf1N1B4_4256	0.58	+0.0
4,719,076	-		Pf1N1B4_4256	0.89	-3.2
4,719,150	+				+0.0
4,719,150	+				-1.9
4,719,150	+				-1.7
4,719,150	+				+0.0
4,719,150	+				-0.7
4,719,150	+				-0.5
4,719,150	+				+0.0
4,719,150	+				+0.0
4,719,151	-				-0.6
4,719,151	-				+0.0
4,719,151	-				+0.0
4,719,151	-				-1.5
4,719,151	-				+0.0
4,719,151	-				+0.0
4,719,151	-				+0.0
4,719,225	-				+0.0
4,719,288	+				-1.9
4,719,288	+				-1.5
4,719,288	+				-0.9
4,719,289	-				-2.5
4,719,289	-				+0.0
4,719,289	-				-3.4
4,719,314	+				-1.8
4,719,314	+				-2.1
4,719,314	+				-1.4
4,719,314	+				+0.0
4,719,315	-				+0.0
4,719,315	-				+0.0
4,719,315	-				+0.0
4,719,745	+		Pf1N1B4_4257	0.40	+0.0
4,719,745	+		Pf1N1B4_4257	0.40	+0.0
4,719,745	+		Pf1N1B4_4257	0.40	+0.0
4,719,746	-				-3.4
4,719,746	-		Pf1N1B4_4257	0.40	-2.0