Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4137

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,578,683	+				-0.0
4,578,683	+				-0.0
4,578,748	-				-2.5
4,578,760	+				-0.0
4,578,760	+				-0.0
4,578,760	+				-0.0
4,578,761	-				+1.0
4,578,900	+				-0.8
4,578,900	+				-0.0
4,578,901	-				-3.3
4,578,966	+				-0.0
4,578,986	+				-0.0
4,578,987	-				-0.0
4,579,038	+				-1.0
4,579,038	+				-0.0
4,579,038	+				-0.0
4,579,038	+				-1.9
4,579,039	-				+0.3
4,579,039	-				-2.2
4,579,039	-				-1.9
4,579,040	+				-0.9
4,579,040	+				-2.2
4,579,040	+				-0.0
4,579,040	+				-0.0
4,579,040	+				-0.0
4,579,040	+				-1.3
4,579,040	+				-1.5
4,579,041	-				-3.2
4,579,041	-				-4.5
4,579,094	+				-0.0
4,579,094	+				-0.0
4,579,094	+				-0.0
4,579,094	+				-1.0
4,579,094	+				-0.0
4,579,094	+				-0.0
4,579,094	+				-0.0
4,579,095	-				-2.7
4,579,095	-				-0.2
4,579,167	+		Pf1N1B4_4136	0.22	-0.0
4,579,167	+		Pf1N1B4_4136	0.22	-2.1
4,579,167	+		Pf1N1B4_4136	0.22	-0.0
4,579,167	+				-1.7
4,579,168	-		Pf1N1B4_4136	0.23	-3.0
4,579,168	-		Pf1N1B4_4136	0.23	-1.3
4,579,168	-		Pf1N1B4_4136	0.23	-1.6
4,579,570	-				-1.1
4,579,633	+				-2.4
4,579,634	-				-0.0
4,579,663	+				-2.6
4,579,663	+				-0.0
4,579,663	+				-0.0
4,579,663	+				-2.6
4,579,663	+				-0.9
4,579,663	+				-1.3
4,579,663	+				-0.0
4,579,663	+				-0.2
4,579,663	+				-1.0
4,579,663	+				-2.6
4,579,663	+				-1.3
4,579,663	+				-1.6
4,579,664	-				-1.7
4,579,664	-				-1.2
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.0
4,579,664	-				-0.3
4,579,664	-				-1.0
4,579,670	+				-1.6
4,579,671	-				-0.0
4,579,691	+				-1.6
4,579,744	-		Pf1N1B4_4137	0.16	-0.0
4,579,874	+		Pf1N1B4_4137	0.41	-0.0
4,579,874	+		Pf1N1B4_4137	0.41	-2.0
4,579,875	-		Pf1N1B4_4137	0.41	-0.0
4,580,003	+		Pf1N1B4_4137	0.66	-1.5
4,580,004	-		Pf1N1B4_4137	0.66	-0.0
4,580,010	+		Pf1N1B4_4137	0.67	-0.0
4,580,010	+				-0.0
4,580,010	+		Pf1N1B4_4137	0.67	-0.0
4,580,010	+		Pf1N1B4_4137	0.67	-0.0
4,580,011	-		Pf1N1B4_4137	0.68	-0.0
4,580,067	+		Pf1N1B4_4137	0.78	-2.9
4,580,067	+		Pf1N1B4_4137	0.78	-0.0
4,580,067	+		Pf1N1B4_4137	0.78	-2.3
4,580,067	+		Pf1N1B4_4137	0.78	-2.2
4,580,067	+				-0.0
4,580,067	+		Pf1N1B4_4137	0.78	-1.5
4,580,068	-		Pf1N1B4_4137	0.79	-2.4
4,580,068	-		Pf1N1B4_4137	0.79	-2.5
4,580,245	-				-0.0
4,580,245	-				-1.4
4,580,299	+				-0.4
4,580,314	+				-0.0
4,580,315	-				-0.0
4,580,401	+				-1.9
4,580,402	-				-4.4
4,580,402	-				-0.0
4,580,459	+				-0.0
4,580,460	-				-1.7
4,580,548	+				-1.7
4,580,599	+				-1.3
4,580,599	+				-1.3
4,580,600	-				-1.4
4,580,653	-				-1.2
4,580,653	-				-0.0
4,580,653	-				-0.0
4,580,797	+				-0.0
4,580,797	+				-0.0
4,580,797	+				-0.0
4,580,798	-				+0.7
4,580,798	-				-2.9
4,580,798	-				-0.0
4,581,003	+				-4.4
4,581,003	+				-1.0
4,581,003	+				-1.8
4,581,004	-				-1.5
4,581,070	+				-1.3
4,581,070	+				-2.3
4,581,070	+				-1.0
4,581,070	+				-0.0
4,581,070	+				-0.0
4,581,071	-				-1.7
4,581,071	-				-0.0
4,581,071	-				-0.0
4,581,071	-				-1.3
4,581,071	-				-2.4
4,581,088	+				-1.5
4,581,129	+		Pf1N1B4_4138	0.17	-0.0
4,581,129	+		Pf1N1B4_4138	0.17	-0.0
4,581,129	+		Pf1N1B4_4138	0.17	-0.0
4,581,130	-		Pf1N1B4_4138	0.17	-2.3
4,581,130	-		Pf1N1B4_4138	0.17	-2.0
4,581,130	-		Pf1N1B4_4138	0.17	-1.5
4,581,130	-		Pf1N1B4_4138	0.17	-1.9
4,581,130	-		Pf1N1B4_4138	0.17	-1.9
4,581,130	-		Pf1N1B4_4138	0.17	-0.0