Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4076

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,525,594	+				-0.0
4,525,717	-		Pf1N1B4_4074	0.51	-3.6
4,525,818	+				-1.6
4,525,818	+				-1.6
4,525,821	+				-0.0
4,525,822	-				-2.4
4,525,931	+				-0.8
4,525,931	+				-0.0
4,525,932	-				-2.8
4,525,971	+				-0.0
4,525,971	+				-1.5
4,525,972	-				-2.1
4,526,090	+		Pf1N1B4_4075	0.25	-0.0
4,526,189	+		Pf1N1B4_4075	0.53	-1.7
4,526,190	-		Pf1N1B4_4075	0.53	-0.0
4,526,190	-		Pf1N1B4_4075	0.53	-1.2
4,526,190	-		Pf1N1B4_4075	0.53	-5.4
4,526,225	+		Pf1N1B4_4075	0.63	-0.6
4,526,225	+		Pf1N1B4_4075	0.63	-0.0
4,526,225	+		Pf1N1B4_4075	0.63	-1.6
4,526,225	+		Pf1N1B4_4075	0.63	-0.0
4,526,225	+		Pf1N1B4_4075	0.63	-1.5
4,526,225	+		Pf1N1B4_4075	0.63	-0.0
4,526,225	+				-0.0
4,526,226	-		Pf1N1B4_4075	0.64	-1.6
4,526,251	-		Pf1N1B4_4075	0.71	-0.0
4,526,288	+		Pf1N1B4_4075	0.81	-3.2
4,526,288	+		Pf1N1B4_4075	0.81	-0.0
4,526,288	+		Pf1N1B4_4075	0.81	-1.4
4,526,288	+				-0.0
4,526,289	-		Pf1N1B4_4075	0.81	-0.6
4,526,291	+		Pf1N1B4_4075	0.82	-1.6
4,526,352	-				-2.5
4,526,352	-				-0.0
4,526,352	-				-0.0
4,526,352	-				-0.0
4,526,352	-				-1.7
4,526,352	-				-0.1
4,526,411	+				-0.0
4,526,411	+				-0.0
4,526,412	-				-0.0
4,526,412	-				-1.0
4,526,412	-				-2.2
4,526,412	-				-0.0
4,526,464	-				-2.1
4,526,464	-				-1.4
4,526,464	-				-0.0
4,526,469	-				-0.0
4,526,469	-				-2.2
4,526,536	+		Pf1N1B4_4076	0.16	-1.9
4,526,562	-		Pf1N1B4_4076	0.22	-0.0
4,526,718	-		Pf1N1B4_4076	0.59	-0.0
4,526,733	-		Pf1N1B4_4076	0.62	-0.0
4,526,818	-		Pf1N1B4_4076	0.82	-0.0
4,526,820	-				-0.0
4,526,820	-		Pf1N1B4_4076	0.82	-0.0
4,526,820	-		Pf1N1B4_4076	0.82	-3.3
4,526,820	-		Pf1N1B4_4076	0.82	-2.7
4,526,895	+				-0.0
4,526,896	-				-0.0
4,526,896	-				-0.0
4,526,900	+				-2.1
4,526,901	-				-0.0
4,526,901	-				-1.8
4,526,998	-				-0.0
4,527,145	+		Pf1N1B4_4077	0.23	-0.8
4,527,146	-		Pf1N1B4_4077	0.24	-0.0
4,527,202	+		Pf1N1B4_4077	0.36	-0.0
4,527,203	-				-1.4
4,527,241	-		Pf1N1B4_4077	0.45	-0.0
4,527,448	+				-1.3
4,527,460	+				-0.0
4,527,461	-				-1.9
4,527,461	-				-0.0
4,527,565	+				-0.0
4,527,566	-				-1.5
4,527,641	+		Pf1N1B4_4078	0.10	-2.7
4,527,641	+		Pf1N1B4_4078	0.10	-1.0
4,527,669	-		Pf1N1B4_4078	0.15	-0.0
4,527,713	+		Pf1N1B4_4078	0.22	-1.2