Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3993

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,436,204	+				-0.0
4,436,256	-		Pf1N1B4_3992	0.17	-2.2
4,436,256	-		Pf1N1B4_3992	0.17	-2.1
4,436,336	+		Pf1N1B4_3992	0.26	-0.0
4,436,337	-		Pf1N1B4_3992	0.26	-0.0
4,436,337	-		Pf1N1B4_3992	0.26	-0.0
4,436,399	+		Pf1N1B4_3992	0.33	-0.0
4,436,428	-		Pf1N1B4_3992	0.36	-0.0
4,436,451	-				-2.5
4,436,513	+		Pf1N1B4_3992	0.45	-1.8
4,436,972	+				-0.0
4,437,051	+				-3.1
4,437,052	-				-2.9
4,437,078	+				-0.0
4,437,079	-				-0.8
4,437,079	-				-0.7
4,437,096	+				-0.0
4,437,099	+				-0.0
4,437,126	+				-1.3
4,437,140	+				-0.0
4,437,141	-				-4.3
4,437,174	+				-1.8
4,437,175	-				-0.0
4,437,181	+				-0.0
4,437,181	+				-0.0
4,437,181	+				-0.0
4,437,182	-				-0.0
4,437,256	+				-2.3
4,437,256	+				-0.0
4,437,256	+				-0.0
4,437,256	+				-3.2
4,437,256	+				-0.0
4,437,256	+				-0.7
4,437,256	+				-0.0
4,437,257	-				-0.0
4,437,257	-				-0.0
4,437,257	-				-1.9
4,438,147	+		Pf1N1B4_3993	0.78	-2.4
4,438,148	-		Pf1N1B4_3993	0.78	-0.0
4,438,294	+				-5.0
4,438,294	+				-5.5
4,438,294	+		Pf1N1B4_3993	0.90	-3.4
4,438,294	+		Pf1N1B4_3993	0.90	-3.1
4,438,294	+		Pf1N1B4_3993	0.90	-4.8
4,438,295	-		Pf1N1B4_3993	0.90	-0.0
4,438,295	-		Pf1N1B4_3993	0.90	-0.0
4,438,300	+				-5.5
4,438,300	+				-0.0
4,438,300	+				-4.6
4,438,300	+				-4.2
4,438,300	+				-0.0
4,438,300	+				-0.0
4,438,300	+				-2.9
4,438,300	+				-4.2
4,438,300	+				-3.0
4,438,300	+				-0.0
4,438,300	+				-0.0
4,438,300	+				-0.0
4,438,300	+				-0.0
4,438,300	+				-5.1
4,438,300	+				-0.0
4,438,300	+				-0.0
4,438,301	-				-0.0
4,438,301	-				-0.0
4,438,301	-				-0.0
4,438,301	-				-0.0
4,438,301	-				-0.0
4,438,301	-				-4.2
4,438,301	-				-3.3
4,438,301	-				-0.0
4,438,384	+				-1.3
4,438,384	+				-0.0
4,438,384	+				-0.0
4,438,384	+				-0.0
4,438,384	+				-0.0
4,438,384	+				-1.4
4,438,384	+				-0.0
4,438,384	+				-0.0
4,438,384	+				-0.0
4,438,384	+				-1.3
4,438,384	+				-0.0
4,438,385	-				-1.6
4,438,385	-				-0.0
4,438,546	+				-2.4
4,438,547	-				-1.1
4,438,547	-				-0.0
4,438,555	-				-1.9
4,438,555	-				-0.0
4,438,555	-				-0.0
4,438,555	-				-2.6
4,438,566	+				-1.2
4,438,802	+		Pf1N1B4_3994	0.18	-1.4
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	-1.5
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,802	+		Pf1N1B4_3994	0.18	+0.9
4,438,802	+		Pf1N1B4_3994	0.18	-2.0
4,438,802	+		Pf1N1B4_3994	0.18	-1.6
4,438,802	+		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-1.1
4,438,803	-		Pf1N1B4_3994	0.18	-3.0
4,438,803	-		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-0.0
4,438,803	-		Pf1N1B4_3994	0.18	-1.1
4,438,805	-		Pf1N1B4_3994	0.18	-1.8
4,438,805	-		Pf1N1B4_3994	0.18	-0.0
4,438,805	-		Pf1N1B4_3994	0.18	-0.0
4,438,805	-		Pf1N1B4_3994	0.18	-1.9
4,438,806	+		Pf1N1B4_3994	0.18	-0.0
4,438,806	+				-0.0
4,438,806	+		Pf1N1B4_3994	0.18	-0.0
4,438,807	-		Pf1N1B4_3994	0.18	-0.0
4,438,807	-				-1.6
4,438,807	-		Pf1N1B4_3994	0.18	-0.0
4,438,807	-		Pf1N1B4_3994	0.18	-0.0
4,439,070	+		Pf1N1B4_3994	0.38	-1.0
4,439,071	-		Pf1N1B4_3994	0.38	-0.0
4,439,184	+		Pf1N1B4_3994	0.46	-0.0
4,439,184	+				-0.0
4,439,184	+		Pf1N1B4_3994	0.46	-2.8
4,439,185	-		Pf1N1B4_3994	0.46	-2.0
4,439,185	-		Pf1N1B4_3994	0.46	-0.0
4,439,185	-		Pf1N1B4_3994	0.46	-0.6
4,439,322	+		Pf1N1B4_3994	0.56	-0.0
4,439,322	+				-0.0
4,439,349	+		Pf1N1B4_3994	0.58	-0.0
4,439,349	+		Pf1N1B4_3994	0.58	-1.6
4,439,349	+		Pf1N1B4_3994	0.58	-0.0
4,439,349	+		Pf1N1B4_3994	0.58	-0.0
4,439,350	-		Pf1N1B4_3994	0.59	-2.6