Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3925

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,363,633	+				-1.6
4,363,633	+				-2.6
4,363,634	-				-3.3
4,363,641	+				-0.0
4,363,641	+				-0.0
4,363,765	-				-0.0
4,363,765	-				-0.0
4,363,765	-				-0.0
4,364,034	+		Pf1N1B4_3925	0.25	-0.0
4,364,121	+		Pf1N1B4_3925	0.32	-1.9
4,364,145	+				-1.0
4,364,145	+		Pf1N1B4_3925	0.33	-3.7
4,364,146	-		Pf1N1B4_3925	0.34	-0.0
4,364,146	-				-1.7
4,364,146	-		Pf1N1B4_3925	0.34	-0.0
4,364,146	-		Pf1N1B4_3925	0.34	-2.0
4,364,250	+		Pf1N1B4_3925	0.41	-2.3
4,364,250	+		Pf1N1B4_3925	0.41	-2.2
4,364,250	+		Pf1N1B4_3925	0.41	-0.0
4,364,250	+		Pf1N1B4_3925	0.41	-0.0
4,364,250	+				-0.0
4,364,251	-		Pf1N1B4_3925	0.41	-0.0
4,364,251	-		Pf1N1B4_3925	0.41	-2.8
4,364,470	+				-2.3
4,364,470	+				-2.1
4,364,470	+		Pf1N1B4_3925	0.58	-0.0
4,364,472	+		Pf1N1B4_3925	0.58	-2.1
4,364,472	+		Pf1N1B4_3925	0.58	-2.1
4,364,499	+		Pf1N1B4_3925	0.60	-0.0
4,364,499	+		Pf1N1B4_3925	0.60	-0.0
4,364,829	+		Pf1N1B4_3925	0.85	-2.9
4,364,830	-		Pf1N1B4_3925	0.85	-2.8
4,364,830	-				-2.7
4,364,934	+				-0.0
4,365,101	+				-0.0
4,365,101	+				-0.0
4,365,101	+				-0.6
4,365,101	+				-0.0
4,365,148	-				-0.0
4,365,148	-				-0.0
4,365,439	+		Pf1N1B4_3926	0.23	-0.0
4,365,439	+		Pf1N1B4_3926	0.23	-1.0
4,365,440	-		Pf1N1B4_3926	0.23	-2.5
4,365,470	+		Pf1N1B4_3926	0.26	+1.1
4,365,542	+		Pf1N1B4_3926	0.32	-0.0
4,365,551	+		Pf1N1B4_3926	0.33	-0.0
4,365,705	-				-0.0
4,365,754	-		Pf1N1B4_3926	0.52	-0.0
4,365,766	-		Pf1N1B4_3926	0.54	-0.0