Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3884

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3881 and Pf1N1B4_3882 overlap by 4 nucleotidesPf1N1B4_3882 and Pf1N1B4_3883 are separated by 45 nucleotidesPf1N1B4_3883 and Pf1N1B4_3884 are separated by 10 nucleotidesPf1N1B4_3884 and Pf1N1B4_3885 are separated by 108 nucleotidesPf1N1B4_3885 and Pf1N1B4_3886 are separated by 206 nucleotides Pf1N1B4_3881 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 4,310,112 to 4,311,065 _3881 Pf1N1B4_3882 - Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1), at 4,311,062 to 4,311,238 _3882 Pf1N1B4_3883 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 4,311,284 to 4,311,892 _3883 Pf1N1B4_3884 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 4,311,903 to 4,313,327 _3884 Pf1N1B4_3885 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 4,313,436 to 4,314,113 _3885 Pf1N1B4_3886 - Aerotaxis receptor Aer, at 4,314,320 to 4,315,885 _3886 Position (kb) 4311 4312 4313 4314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4311.047 kb on + strandat 4311.048 kb on - strandat 4311.251 kb on + strandat 4311.252 kb on - strandat 4311.258 kb on - strandat 4311.325 kb on - strandat 4311.325 kb on - strandat 4311.397 kb on - strand, within Pf1N1B4_3883at 4311.478 kb on - strand, within Pf1N1B4_3883at 4311.519 kb on + strand, within Pf1N1B4_3883at 4311.519 kb on + strand, within Pf1N1B4_3883at 4311.520 kb on - strand, within Pf1N1B4_3883at 4311.520 kb on - strand, within Pf1N1B4_3883at 4311.520 kb on - strandat 4311.520 kb on - strand, within Pf1N1B4_3883at 4311.639 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.717 kb on + strand, within Pf1N1B4_3883at 4311.718 kb on - strand, within Pf1N1B4_3883at 4311.718 kb on - strand, within Pf1N1B4_3883at 4311.750 kb on + strand, within Pf1N1B4_3883at 4311.751 kb on - strand, within Pf1N1B4_3883at 4311.970 kb on + strandat 4311.970 kb on + strandat 4311.971 kb on - strandat 4311.971 kb on - strandat 4311.971 kb on - strandat 4312.066 kb on + strand, within Pf1N1B4_3884at 4312.066 kb on + strand, within Pf1N1B4_3884at 4312.067 kb on - strand, within Pf1N1B4_3884at 4312.067 kb on - strand, within Pf1N1B4_3884at 4312.067 kb on - strand, within Pf1N1B4_3884at 4312.067 kb on - strand, within Pf1N1B4_3884at 4312.067 kb on - strand, within Pf1N1B4_3884at 4312.144 kb on + strand, within Pf1N1B4_3884at 4312.144 kb on + strandat 4312.145 kb on - strand, within Pf1N1B4_3884at 4312.145 kb on - strandat 4312.145 kb on - strand, within Pf1N1B4_3884at 4312.316 kb on - strand, within Pf1N1B4_3884at 4312.316 kb on - strand, within Pf1N1B4_3884at 4312.379 kb on - strand, within Pf1N1B4_3884at 4312.430 kb on + strand, within Pf1N1B4_3884at 4312.430 kb on + strand, within Pf1N1B4_3884at 4312.431 kb on - strand, within Pf1N1B4_3884at 4312.431 kb on - strand, within Pf1N1B4_3884at 4312.431 kb on - strand, within Pf1N1B4_3884at 4312.546 kb on + strand, within Pf1N1B4_3884at 4312.547 kb on - strand, within Pf1N1B4_3884at 4312.547 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.577 kb on - strand, within Pf1N1B4_3884at 4312.624 kb on + strand, within Pf1N1B4_3884at 4312.624 kb on + strand, within Pf1N1B4_3884at 4312.624 kb on + strand, within Pf1N1B4_3884at 4312.624 kb on + strand, within Pf1N1B4_3884at 4312.624 kb on + strand, within Pf1N1B4_3884at 4312.657 kb on + strand, within Pf1N1B4_3884at 4312.657 kb on + strand, within Pf1N1B4_3884at 4312.657 kb on + strand, within Pf1N1B4_3884at 4312.657 kb on + strand, within Pf1N1B4_3884at 4312.658 kb on - strand, within Pf1N1B4_3884at 4312.658 kb on - strand, within Pf1N1B4_3884at 4312.658 kb on - strand, within Pf1N1B4_3884at 4312.658 kb on - strand, within Pf1N1B4_3884at 4312.660 kb on + strand, within Pf1N1B4_3884at 4312.660 kb on + strand, within Pf1N1B4_3884at 4312.660 kb on + strand, within Pf1N1B4_3884at 4312.660 kb on + strand, within Pf1N1B4_3884at 4312.661 kb on - strand, within Pf1N1B4_3884at 4312.661 kb on - strand, within Pf1N1B4_3884at 4312.661 kb on - strand, within Pf1N1B4_3884at 4312.661 kb on - strand, within Pf1N1B4_3884at 4312.661 kb on - strand, within Pf1N1B4_3884at 4312.750 kb on + strand, within Pf1N1B4_3884at 4312.760 kb on - strandat 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.855 kb on + strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.856 kb on - strandat 4312.856 kb on - strand, within Pf1N1B4_3884at 4312.906 kb on + strandat 4312.906 kb on + strand, within Pf1N1B4_3884at 4312.906 kb on + strand, within Pf1N1B4_3884at 4312.907 kb on - strand, within Pf1N1B4_3884at 4313.086 kb on - strand, within Pf1N1B4_3884at 4313.092 kb on + strand, within Pf1N1B4_3884at 4313.092 kb on + strand, within Pf1N1B4_3884at 4313.092 kb on + strand, within Pf1N1B4_3884at 4313.093 kb on - strand, within Pf1N1B4_3884at 4313.093 kb on - strand, within Pf1N1B4_3884at 4313.093 kb on - strand, within Pf1N1B4_3884at 4313.093 kb on - strand, within Pf1N1B4_3884at 4313.144 kb on + strand, within Pf1N1B4_3884at 4313.144 kb on + strand, within Pf1N1B4_3884at 4313.270 kb on + strandat 4313.270 kb on + strandat 4313.296 kb on + strandat 4313.296 kb on + strandat 4313.297 kb on - strandat 4313.297 kb on - strandat 4313.297 kb on - strandat 4313.297 kb on - strandat 4313.297 kb on - strandat 4313.302 kb on + strandat 4313.315 kb on + strandat 4313.315 kb on + strandat 4313.315 kb on + strandat 4313.315 kb on + strandat 4313.315 kb on + strandat 4313.376 kb on - strandat 4313.409 kb on + strandat 4313.409 kb on + strandat 4313.409 kb on + strandat 4313.411 kb on + strandat 4313.411 kb on + strandat 4313.411 kb on + strandat 4313.411 kb on + strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.412 kb on - strandat 4313.420 kb on + strandat 4313.421 kb on - strandat 4313.649 kb on + strand, within Pf1N1B4_3885at 4313.649 kb on + strand, within Pf1N1B4_3885at 4313.730 kb on + strand, within Pf1N1B4_3885at 4313.730 kb on + strand, within Pf1N1B4_3885at 4313.730 kb on + strand, within Pf1N1B4_3885at 4313.730 kb on + strand, within Pf1N1B4_3885at 4313.730 kb on + strand, within Pf1N1B4_3885at 4313.731 kb on - strand, within Pf1N1B4_3885at 4313.731 kb on - strandat 4313.731 kb on - strand, within Pf1N1B4_3885at 4313.731 kb on - strand, within Pf1N1B4_3885at 4313.731 kb on - strand, within Pf1N1B4_3885at 4313.859 kb on + strand, within Pf1N1B4_3885at 4313.859 kb on + strand, within Pf1N1B4_3885at 4313.859 kb on + strand, within Pf1N1B4_3885at 4313.977 kb on - strand, within Pf1N1B4_3885at 4313.977 kb on - strand, within Pf1N1B4_3885at 4314.056 kb on + strandat 4314.057 kb on - strandat 4314.177 kb on + strandat 4314.205 kb on + strandat 4314.206 kb on - strandat 4314.269 kb on + strandat 4314.316 kb on + strandat 4314.316 kb on + strandat 4314.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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4,311,047 + -0.8
4,311,048 - -0.0
4,311,251 + -0.0
4,311,252 - -0.0
4,311,258 - -0.0
4,311,325 - -0.0
4,311,325 - -0.0
4,311,397 - Pf1N1B4_3883 0.19 +0.5
4,311,478 - Pf1N1B4_3883 0.32 -0.0
4,311,519 + Pf1N1B4_3883 0.39 -0.0
4,311,519 + Pf1N1B4_3883 0.39 -0.5
4,311,520 - Pf1N1B4_3883 0.39 -0.0
4,311,520 - Pf1N1B4_3883 0.39 -0.0
4,311,520 - +1.3
4,311,520 - Pf1N1B4_3883 0.39 -0.0
4,311,639 + Pf1N1B4_3883 0.58 -0.0
4,311,717 + Pf1N1B4_3883 0.71 -1.0
4,311,717 + Pf1N1B4_3883 0.71 +0.1
4,311,717 + Pf1N1B4_3883 0.71 +1.0
4,311,717 + Pf1N1B4_3883 0.71 -0.0
4,311,717 + Pf1N1B4_3883 0.71 -0.6
4,311,717 + Pf1N1B4_3883 0.71 -0.0
4,311,717 + Pf1N1B4_3883 0.71 -0.0
4,311,718 - Pf1N1B4_3883 0.71 -0.0
4,311,718 - Pf1N1B4_3883 0.71 -0.0
4,311,750 + Pf1N1B4_3883 0.77 -0.5
4,311,751 - Pf1N1B4_3883 0.77 -0.0
4,311,970 + -0.5
4,311,970 + +0.0
4,311,971 - -3.0
4,311,971 - -0.0
4,311,971 - -0.0
4,312,066 + Pf1N1B4_3884 0.11 -0.0
4,312,066 + Pf1N1B4_3884 0.11 +0.1
4,312,067 - Pf1N1B4_3884 0.12 -0.0
4,312,067 - Pf1N1B4_3884 0.12 -0.0
4,312,067 - Pf1N1B4_3884 0.12 -0.0
4,312,067 - Pf1N1B4_3884 0.12 -0.9
4,312,067 - Pf1N1B4_3884 0.12 -0.0
4,312,144 + Pf1N1B4_3884 0.17 -1.2
4,312,144 + -0.0
4,312,145 - Pf1N1B4_3884 0.17 -0.0
4,312,145 - +0.9
4,312,145 - Pf1N1B4_3884 0.17 +1.0
4,312,316 - Pf1N1B4_3884 0.29 -0.0
4,312,316 - Pf1N1B4_3884 0.29 -0.0
4,312,379 - Pf1N1B4_3884 0.33 +0.7
4,312,430 + Pf1N1B4_3884 0.37 +0.2
4,312,430 + Pf1N1B4_3884 0.37 -0.0
4,312,431 - Pf1N1B4_3884 0.37 -0.0
4,312,431 - Pf1N1B4_3884 0.37 -0.4
4,312,431 - Pf1N1B4_3884 0.37 -0.0
4,312,546 + Pf1N1B4_3884 0.45 +0.2
4,312,547 - Pf1N1B4_3884 0.45 -0.0
4,312,547 - Pf1N1B4_3884 0.45 -0.0
4,312,577 - Pf1N1B4_3884 0.47 -0.0
4,312,577 - Pf1N1B4_3884 0.47 -0.0
4,312,577 - Pf1N1B4_3884 0.47 -0.0
4,312,577 - Pf1N1B4_3884 0.47 -2.4
4,312,577 - Pf1N1B4_3884 0.47 +0.9
4,312,577 - Pf1N1B4_3884 0.47 -0.0
4,312,577 - Pf1N1B4_3884 0.47 -0.0
4,312,624 + Pf1N1B4_3884 0.51 +0.4
4,312,624 + Pf1N1B4_3884 0.51 -0.0
4,312,624 + Pf1N1B4_3884 0.51 -0.0
4,312,624 + Pf1N1B4_3884 0.51 +0.3
4,312,624 + Pf1N1B4_3884 0.51 +0.4
4,312,657 + Pf1N1B4_3884 0.53 +1.2
4,312,657 + Pf1N1B4_3884 0.53 -0.0
4,312,657 + Pf1N1B4_3884 0.53 -0.0
4,312,657 + Pf1N1B4_3884 0.53 -0.0
4,312,658 - Pf1N1B4_3884 0.53 -0.0
4,312,658 - Pf1N1B4_3884 0.53 -0.0
4,312,658 - Pf1N1B4_3884 0.53 +0.7
4,312,658 - Pf1N1B4_3884 0.53 -0.2
4,312,660 + Pf1N1B4_3884 0.53 -0.0
4,312,660 + Pf1N1B4_3884 0.53 -0.0
4,312,660 + Pf1N1B4_3884 0.53 -0.0
4,312,660 + Pf1N1B4_3884 0.53 -0.0
4,312,661 - Pf1N1B4_3884 0.53 -0.0
4,312,661 - Pf1N1B4_3884 0.53 -0.0
4,312,661 - Pf1N1B4_3884 0.53 -0.0
4,312,661 - Pf1N1B4_3884 0.53 +1.8
4,312,661 - Pf1N1B4_3884 0.53 -0.1
4,312,750 + Pf1N1B4_3884 0.59 +0.1
4,312,760 - +1.3
4,312,855 + Pf1N1B4_3884 0.67 +0.7
4,312,855 + Pf1N1B4_3884 0.67 -0.0
4,312,855 + Pf1N1B4_3884 0.67 -0.0
4,312,855 + Pf1N1B4_3884 0.67 -0.2
4,312,855 + Pf1N1B4_3884 0.67 -0.0
4,312,855 + Pf1N1B4_3884 0.67 +0.3
4,312,855 + Pf1N1B4_3884 0.67 -0.0
4,312,856 - Pf1N1B4_3884 0.67 +1.1
4,312,856 - Pf1N1B4_3884 0.67 -0.0
4,312,856 - Pf1N1B4_3884 0.67 +1.5
4,312,856 - Pf1N1B4_3884 0.67 -0.0
4,312,856 - Pf1N1B4_3884 0.67 -0.0
4,312,856 - Pf1N1B4_3884 0.67 +0.9
4,312,856 - Pf1N1B4_3884 0.67 +0.9
4,312,856 - Pf1N1B4_3884 0.67 -0.0
4,312,856 - -0.4
4,312,856 - Pf1N1B4_3884 0.67 -0.0
4,312,906 + -0.4
4,312,906 + Pf1N1B4_3884 0.70 +0.3
4,312,906 + Pf1N1B4_3884 0.70 -0.4
4,312,907 - Pf1N1B4_3884 0.70 -0.0
4,313,086 - Pf1N1B4_3884 0.83 -0.0
4,313,092 + Pf1N1B4_3884 0.83 -0.0
4,313,092 + Pf1N1B4_3884 0.83 -1.7
4,313,092 + Pf1N1B4_3884 0.83 -0.1
4,313,093 - Pf1N1B4_3884 0.84 -0.0
4,313,093 - Pf1N1B4_3884 0.84 -0.0
4,313,093 - Pf1N1B4_3884 0.84 -0.0
4,313,093 - Pf1N1B4_3884 0.84 -0.0
4,313,144 + Pf1N1B4_3884 0.87 -0.0
4,313,144 + Pf1N1B4_3884 0.87 +0.6
4,313,270 + -0.8
4,313,270 + -0.0
4,313,296 + -0.0
4,313,296 + -0.0
4,313,297 - -0.0
4,313,297 - -0.0
4,313,297 - -0.0
4,313,297 - -0.0
4,313,297 - -0.0
4,313,302 + -0.0
4,313,315 + -0.0
4,313,315 + -0.0
4,313,315 + -0.0
4,313,315 + -0.0
4,313,315 + +0.1
4,313,376 - -0.8
4,313,409 + -0.9
4,313,409 + -0.3
4,313,409 + -0.0
4,313,411 + -0.0
4,313,411 + -0.0
4,313,411 + -0.5
4,313,411 + -0.0
4,313,412 - -0.0
4,313,412 - -0.0
4,313,412 - -0.0
4,313,412 - -0.0
4,313,412 - -1.1
4,313,412 - -0.0
4,313,412 - +0.2
4,313,412 - -0.0
4,313,420 + -0.8
4,313,421 - -0.0
4,313,649 + Pf1N1B4_3885 0.31 -0.0
4,313,649 + Pf1N1B4_3885 0.31 -0.0
4,313,730 + Pf1N1B4_3885 0.43 -0.0
4,313,730 + Pf1N1B4_3885 0.43 -0.0
4,313,730 + Pf1N1B4_3885 0.43 -0.0
4,313,730 + Pf1N1B4_3885 0.43 -2.8
4,313,730 + Pf1N1B4_3885 0.43 -0.0
4,313,731 - Pf1N1B4_3885 0.44 -0.0
4,313,731 - -3.3
4,313,731 - Pf1N1B4_3885 0.44 -0.0
4,313,731 - Pf1N1B4_3885 0.44 -0.0
4,313,731 - Pf1N1B4_3885 0.44 -0.0
4,313,859 + Pf1N1B4_3885 0.62 -2.2
4,313,859 + Pf1N1B4_3885 0.62 -0.0
4,313,859 + Pf1N1B4_3885 0.62 -0.0
4,313,977 - Pf1N1B4_3885 0.80 -2.1
4,313,977 - Pf1N1B4_3885 0.80 -0.0
4,314,056 + -2.0
4,314,057 - -0.0
4,314,177 + -1.0
4,314,205 + -2.0
4,314,206 - -3.9
4,314,269 + -1.0
4,314,316 + -0.0
4,314,316 + -0.0
4,314,317 - -0.0

Or see this region's nucleotide sequence