Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3881

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,309,135	+		Pf1N1B4_3879	0.70	-0.0
4,309,135	+		Pf1N1B4_3879	0.70	+0.8
4,309,135	+		Pf1N1B4_3879	0.70	+0.8
4,309,135	+		Pf1N1B4_3879	0.70	+0.6
4,309,135	+		Pf1N1B4_3879	0.70	-0.0
4,309,136	-		Pf1N1B4_3879	0.70	-1.2
4,309,136	-		Pf1N1B4_3879	0.70	-0.2
4,309,136	-		Pf1N1B4_3879	0.70	-0.0
4,309,136	-		Pf1N1B4_3879	0.70	-0.0
4,309,145	+		Pf1N1B4_3879	0.71	-0.0
4,309,146	-		Pf1N1B4_3879	0.71	-1.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.1
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+1.2
4,309,153	+				-0.3
4,309,153	+		Pf1N1B4_3879	0.71	+0.1
4,309,153	+		Pf1N1B4_3879	0.71	+0.6
4,309,153	+		Pf1N1B4_3879	0.71	-0.3
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.6
4,309,153	+		Pf1N1B4_3879	0.71	+1.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.7
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.6
4,309,154	-		Pf1N1B4_3879	0.71	-1.8
4,309,154	-		Pf1N1B4_3879	0.71	-1.6
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.9
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.2
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-1.7
4,309,154	-		Pf1N1B4_3879	0.71	+0.5
4,309,204	+		Pf1N1B4_3879	0.75	-0.0
4,309,204	+		Pf1N1B4_3879	0.75	-1.4
4,309,204	+		Pf1N1B4_3879	0.75	-0.0
4,309,204	+				+0.5
4,309,204	+		Pf1N1B4_3879	0.75	-0.4
4,309,204	+		Pf1N1B4_3879	0.75	-0.0
4,309,204	+		Pf1N1B4_3879	0.75	-0.0
4,309,205	-		Pf1N1B4_3879	0.75	-0.0
4,309,205	-		Pf1N1B4_3879	0.75	-0.8
4,309,205	-		Pf1N1B4_3879	0.75	-1.6
4,309,205	-		Pf1N1B4_3879	0.75	-0.0
4,309,205	-		Pf1N1B4_3879	0.75	-0.0
4,309,205	-		Pf1N1B4_3879	0.75	-0.0
4,309,205	-		Pf1N1B4_3879	0.75	-0.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.5
4,309,390	+		Pf1N1B4_3879	0.89	-0.0
4,309,390	+		Pf1N1B4_3879	0.89	-0.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.9
4,309,390	+				-0.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.7
4,309,390	+		Pf1N1B4_3879	0.89	+0.5
4,309,390	+		Pf1N1B4_3879	0.89	-0.0
4,309,390	+		Pf1N1B4_3879	0.89	-0.0
4,309,390	+		Pf1N1B4_3879	0.89	+0.7
4,309,390	+		Pf1N1B4_3879	0.89	-0.0
4,309,391	-		Pf1N1B4_3879	0.89	-1.0
4,309,391	-		Pf1N1B4_3879	0.89	-0.5
4,309,391	-		Pf1N1B4_3879	0.89	+0.5
4,309,391	-		Pf1N1B4_3879	0.89	-0.0
4,309,391	-		Pf1N1B4_3879	0.89	-0.0
4,309,391	-		Pf1N1B4_3879	0.89	-0.0
4,309,391	-		Pf1N1B4_3879	0.89	-0.0
4,309,391	-		Pf1N1B4_3879	0.89	-0.4
4,309,391	-				+0.6
4,309,391	-		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	+1.9
4,309,393	+		Pf1N1B4_3879	0.89	-0.0
4,309,393	+		Pf1N1B4_3879	0.89	+0.0
4,309,393	+		Pf1N1B4_3879	0.89	-1.8
4,309,394	-		Pf1N1B4_3879	0.89	-0.0
4,309,394	-		Pf1N1B4_3879	0.89	-2.2
4,309,394	-				-3.0
4,309,588	-				-0.0
4,309,592	+		Pf1N1B4_3880	0.21	-0.0
4,309,592	+		Pf1N1B4_3880	0.21	-0.0
4,309,592	+		Pf1N1B4_3880	0.21	-0.0
4,309,593	-		Pf1N1B4_3880	0.21	-0.0
4,309,593	-		Pf1N1B4_3880	0.21	-0.4
4,309,593	-		Pf1N1B4_3880	0.21	-0.9
4,309,593	-		Pf1N1B4_3880	0.21	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	+2.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-1.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	+2.7
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,594	+		Pf1N1B4_3880	0.22	-0.0
4,309,595	-		Pf1N1B4_3880	0.22	-0.0
4,309,595	-		Pf1N1B4_3880	0.22	-0.0
4,309,595	-		Pf1N1B4_3880	0.22	-0.6
4,309,595	-		Pf1N1B4_3880	0.22	-0.2
4,309,595	-		Pf1N1B4_3880	0.22	-0.0
4,309,595	-		Pf1N1B4_3880	0.22	-0.0
4,309,595	-		Pf1N1B4_3880	0.22	+1.0
4,309,595	-		Pf1N1B4_3880	0.22	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	+0.1
4,309,598	+		Pf1N1B4_3880	0.23	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	+2.0
4,309,598	+		Pf1N1B4_3880	0.23	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	-1.9
4,309,598	+		Pf1N1B4_3880	0.23	+1.0
4,309,598	+		Pf1N1B4_3880	0.23	-0.0
4,309,598	+		Pf1N1B4_3880	0.23	+1.4
4,309,598	+		Pf1N1B4_3880	0.23	+2.4
4,309,599	-		Pf1N1B4_3880	0.23	-0.0
4,309,599	-		Pf1N1B4_3880	0.23	-0.0
4,309,599	-		Pf1N1B4_3880	0.23	-0.0
4,309,599	-		Pf1N1B4_3880	0.23	-0.0
4,309,599	-		Pf1N1B4_3880	0.23	-0.0
4,309,599	-		Pf1N1B4_3880	0.23	+0.1
4,309,599	-		Pf1N1B4_3880	0.23	-4.1
4,309,599	-		Pf1N1B4_3880	0.23	-0.2
4,309,599	-		Pf1N1B4_3880	0.23	-0.3
4,309,599	-		Pf1N1B4_3880	0.23	-0.2
4,309,600	+		Pf1N1B4_3880	0.23	-0.0
4,309,600	+		Pf1N1B4_3880	0.23	-0.0
4,309,600	+		Pf1N1B4_3880	0.23	-0.0
4,309,600	+		Pf1N1B4_3880	0.23	-0.0
4,309,600	+		Pf1N1B4_3880	0.23	+1.2
4,309,600	+		Pf1N1B4_3880	0.23	-0.0
4,309,600	+		Pf1N1B4_3880	0.23	+1.0
4,309,601	-		Pf1N1B4_3880	0.23	-0.0
4,309,601	-		Pf1N1B4_3880	0.23	+0.1
4,309,631	+		Pf1N1B4_3880	0.31	-0.0
4,309,632	-				-0.0
4,309,632	-		Pf1N1B4_3880	0.31	-0.7
4,309,655	+		Pf1N1B4_3880	0.38	+2.6
4,309,655	+		Pf1N1B4_3880	0.38	-0.0
4,309,658	+		Pf1N1B4_3880	0.38	-0.0
4,309,658	+		Pf1N1B4_3880	0.38	-0.0
4,309,658	+		Pf1N1B4_3880	0.38	-0.0
4,309,659	-		Pf1N1B4_3880	0.39	-0.0
4,309,659	-		Pf1N1B4_3880	0.39	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	+1.2
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	+1.1
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,681	+		Pf1N1B4_3880	0.44	+2.0
4,309,681	+		Pf1N1B4_3880	0.44	-0.0
4,309,682	-		Pf1N1B4_3880	0.45	-0.0
4,309,682	-		Pf1N1B4_3880	0.45	-0.0
4,309,682	-				-0.0
4,309,685	+		Pf1N1B4_3880	0.45	+1.4
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	+1.6
4,309,685	+		Pf1N1B4_3880	0.45	+1.1
4,309,685	+		Pf1N1B4_3880	0.45	-0.0
4,309,685	+		Pf1N1B4_3880	0.45	-0.4
4,309,720	+		Pf1N1B4_3880	0.55	-0.4
4,309,720	+		Pf1N1B4_3880	0.55	-0.0
4,309,720	+		Pf1N1B4_3880	0.55	+0.8
4,309,720	+		Pf1N1B4_3880	0.55	+1.6
4,309,720	+		Pf1N1B4_3880	0.55	-0.0
4,309,720	+		Pf1N1B4_3880	0.55	+1.3
4,309,721	-		Pf1N1B4_3880	0.55	-0.0
4,309,721	-		Pf1N1B4_3880	0.55	-0.0
4,310,000	-				-0.0
4,310,000	-				-1.8
4,310,098	-				-0.0
4,310,147	+				+0.5
4,310,147	+				-0.0
4,310,171	-				-0.0
4,310,171	-				-0.7
4,310,171	-				-0.0
4,310,176	+				-2.0
4,310,176	+				-0.0
4,310,176	+				-0.0
4,310,176	+				-0.0
4,310,177	-				-0.0
4,310,177	-				-0.0
4,310,177	-				+1.8
4,310,177	-				-0.0
4,310,177	-				+2.5
4,310,177	-				-0.0
4,310,177	-				-0.0
4,310,177	-				-0.0
4,310,198	+				+0.8
4,310,198	+				-0.0
4,310,231	+		Pf1N1B4_3881	0.12	-0.4
4,310,232	-		Pf1N1B4_3881	0.13	-0.0
4,310,232	-		Pf1N1B4_3881	0.13	-0.0
4,310,282	+		Pf1N1B4_3881	0.18	-0.0
4,310,283	-		Pf1N1B4_3881	0.18	-0.0
4,310,283	-		Pf1N1B4_3881	0.18	-0.0
4,310,283	-		Pf1N1B4_3881	0.18	+2.4
4,310,283	-		Pf1N1B4_3881	0.18	+1.8
4,310,283	-		Pf1N1B4_3881	0.18	-0.0
4,310,287	+				-0.0
4,310,288	-		Pf1N1B4_3881	0.18	-0.0
4,310,288	-		Pf1N1B4_3881	0.18	-2.3
4,310,288	-		Pf1N1B4_3881	0.18	-0.0
4,310,288	-		Pf1N1B4_3881	0.18	+1.5
4,310,288	-		Pf1N1B4_3881	0.18	-0.0
4,310,288	-		Pf1N1B4_3881	0.18	-0.0
4,310,292	-		Pf1N1B4_3881	0.19	-0.0
4,310,292	-		Pf1N1B4_3881	0.19	+1.3
4,310,292	-		Pf1N1B4_3881	0.19	-0.0
4,310,292	-		Pf1N1B4_3881	0.19	+2.7
4,310,292	-		Pf1N1B4_3881	0.19	-0.0
4,310,292	-		Pf1N1B4_3881	0.19	+1.3
4,310,372	+		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	+0.6
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-				-0.0
4,310,373	-		Pf1N1B4_3881	0.27	+1.6
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	+1.1
4,310,373	-		Pf1N1B4_3881	0.27	+1.5
4,310,373	-		Pf1N1B4_3881	0.27	-0.0
4,310,373	-		Pf1N1B4_3881	0.27	+1.9
4,310,373	-				-0.0
4,310,455	+		Pf1N1B4_3881	0.36	-0.0
4,310,455	+		Pf1N1B4_3881	0.36	-0.0
4,310,455	+		Pf1N1B4_3881	0.36	-0.0
4,310,455	+		Pf1N1B4_3881	0.36	-1.3
4,310,455	+		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	+1.5
4,310,456	-		Pf1N1B4_3881	0.36	+1.2
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	+1.3
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	+2.2
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	-0.0
4,310,456	-		Pf1N1B4_3881	0.36	+1.5
4,311,047	+				-0.8
4,311,048	-				-0.0
4,311,251	+				-0.0
4,311,252	-				-0.0
4,311,258	-				-0.0
4,311,325	-				-0.0
4,311,325	-				-0.0
4,311,397	-		Pf1N1B4_3883	0.19	+0.5
4,311,478	-		Pf1N1B4_3883	0.32	-0.0
4,311,519	+		Pf1N1B4_3883	0.39	-0.0
4,311,519	+		Pf1N1B4_3883	0.39	-0.5
4,311,520	-		Pf1N1B4_3883	0.39	-0.0
4,311,520	-		Pf1N1B4_3883	0.39	-0.0
4,311,520	-				+1.3
4,311,520	-		Pf1N1B4_3883	0.39	-0.0
4,311,639	+		Pf1N1B4_3883	0.58	-0.0
4,311,717	+		Pf1N1B4_3883	0.71	-1.0
4,311,717	+		Pf1N1B4_3883	0.71	+0.1
4,311,717	+		Pf1N1B4_3883	0.71	+1.0
4,311,717	+		Pf1N1B4_3883	0.71	-0.0
4,311,717	+		Pf1N1B4_3883	0.71	-0.6
4,311,717	+		Pf1N1B4_3883	0.71	-0.0
4,311,717	+		Pf1N1B4_3883	0.71	-0.0
4,311,718	-		Pf1N1B4_3883	0.71	-0.0
4,311,718	-		Pf1N1B4_3883	0.71	-0.0
4,311,750	+		Pf1N1B4_3883	0.77	-0.5
4,311,751	-		Pf1N1B4_3883	0.77	-0.0
4,311,970	+				-0.5
4,311,970	+				+0.0
4,311,971	-				-3.0
4,311,971	-				-0.0
4,311,971	-				-0.0