Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3878

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,306,619	+				-0.0
4,306,619	+		Pf1N1B4_3876	0.22	-1.0
4,306,620	-		Pf1N1B4_3876	0.22	-0.0
4,306,739	-		Pf1N1B4_3876	0.34	-0.0
4,306,739	-		Pf1N1B4_3876	0.34	-0.0
4,306,739	-		Pf1N1B4_3876	0.34	-0.7
4,306,739	-		Pf1N1B4_3876	0.34	-1.5
4,306,886	-		Pf1N1B4_3876	0.49	-0.0
4,307,119	+		Pf1N1B4_3876	0.72	-0.0
4,307,120	-		Pf1N1B4_3876	0.72	-0.0
4,307,120	-		Pf1N1B4_3876	0.72	-0.0
4,307,120	-		Pf1N1B4_3876	0.72	-0.0
4,307,120	-		Pf1N1B4_3876	0.72	-0.9
4,307,120	-		Pf1N1B4_3876	0.72	-2.6
4,307,126	-		Pf1N1B4_3876	0.73	-1.5
4,307,126	-		Pf1N1B4_3876	0.73	-1.7
4,307,177	-		Pf1N1B4_3876	0.78	-0.0
4,307,242	+		Pf1N1B4_3876	0.85	-1.4
4,307,243	-		Pf1N1B4_3876	0.85	-0.0
4,307,243	-		Pf1N1B4_3876	0.85	-0.0
4,307,243	-		Pf1N1B4_3876	0.85	-0.0
4,307,243	-		Pf1N1B4_3876	0.85	-0.6
4,307,368	+				-1.1
4,307,368	+				-1.3
4,307,368	+				-0.0
4,307,369	-				-1.5
4,307,369	-				-2.2
4,307,369	-				-0.0
4,307,369	-				-0.0
4,307,369	-				-0.0
4,307,369	-				-1.3
4,307,384	+				-0.7
4,307,384	+				-0.8
4,307,385	-				-0.6
4,307,385	-				-1.0
4,307,385	-				-1.8
4,307,385	-				-0.0
4,307,385	-				-0.0
4,307,385	-				-2.0
4,307,385	-				-0.0
4,307,399	-				-0.0
4,307,404	+				-0.0
4,307,404	+				-0.0
4,307,404	+				-0.0
4,307,405	-				-0.0
4,307,405	-				-1.9
4,307,405	-				-1.4
4,307,574	+				-0.0
4,307,574	+				-0.0
4,307,575	-				-1.0
4,307,575	-				-0.0
4,307,575	-				-0.0
4,307,575	-				-1.6
4,307,575	-				-0.0
4,307,619	-				-0.0
4,307,619	-				-1.4
4,307,690	+		Pf1N1B4_3878	0.18	-1.0
4,307,691	-		Pf1N1B4_3878	0.19	-1.8
4,307,691	-		Pf1N1B4_3878	0.19	-0.0
4,307,691	-		Pf1N1B4_3878	0.19	-1.3
4,307,691	-		Pf1N1B4_3878	0.19	-0.8
4,307,797	+		Pf1N1B4_3878	0.36	-0.0
4,307,797	+		Pf1N1B4_3878	0.36	-0.0
4,307,797	+		Pf1N1B4_3878	0.36	-0.0
4,307,797	+		Pf1N1B4_3878	0.36	-0.0
4,307,798	-		Pf1N1B4_3878	0.36	-1.0
4,307,798	-		Pf1N1B4_3878	0.36	-0.3
4,307,798	-		Pf1N1B4_3878	0.36	-3.2
4,307,798	-		Pf1N1B4_3878	0.36	-0.0
4,307,813	+		Pf1N1B4_3878	0.39	-0.2
4,307,813	+		Pf1N1B4_3878	0.39	-0.0
4,307,814	-		Pf1N1B4_3878	0.39	-0.0
4,307,814	-		Pf1N1B4_3878	0.39	-0.0
4,307,814	-		Pf1N1B4_3878	0.39	-2.8
4,307,814	-		Pf1N1B4_3878	0.39	-0.0
4,307,814	-				-0.0
4,307,814	-		Pf1N1B4_3878	0.39	-2.3
4,307,814	-		Pf1N1B4_3878	0.39	+0.8
4,307,934	-		Pf1N1B4_3878	0.58	-0.0
4,308,011	+		Pf1N1B4_3878	0.71	+0.1
4,308,011	+		Pf1N1B4_3878	0.71	+0.1
4,308,012	-		Pf1N1B4_3878	0.71	-0.0
4,308,012	-		Pf1N1B4_3878	0.71	-1.1
4,308,012	-		Pf1N1B4_3878	0.71	-0.0
4,308,012	-		Pf1N1B4_3878	0.71	-0.0
4,308,159	+				+1.3
4,308,159	+				-0.0
4,308,160	-				-0.8
4,308,201	+				+1.0
4,308,201	+				-0.0
4,308,201	+				-0.0
4,308,202	-				-0.0
4,308,202	-				-1.7
4,308,202	-				-2.3
4,308,202	-				-0.0
4,308,202	-				-1.4
4,308,249	+				-0.0
4,308,249	+				-0.0
4,308,249	+				-0.0
4,308,250	-				-1.5
4,308,250	-				-1.6
4,308,250	-				-0.0
4,308,255	-				-0.0
4,308,261	+				-0.0
4,308,262	-				-0.0
4,308,262	-				-0.0
4,308,268	+				-0.0
4,308,269	-				-0.0
4,308,269	-				-0.2
4,308,269	-				-0.0
4,308,364	+		Pf1N1B4_3879	0.13	-0.6
4,308,365	-		Pf1N1B4_3879	0.13	-0.0
4,308,365	-		Pf1N1B4_3879	0.13	-0.6
4,308,365	-		Pf1N1B4_3879	0.13	-0.0
4,308,365	-		Pf1N1B4_3879	0.13	-1.6
4,308,442	+		Pf1N1B4_3879	0.19	-1.3
4,308,442	+		Pf1N1B4_3879	0.19	-0.0
4,308,442	+		Pf1N1B4_3879	0.19	-0.2
4,308,442	+		Pf1N1B4_3879	0.19	-1.1
4,308,538	+		Pf1N1B4_3879	0.26	-0.4
4,308,538	+		Pf1N1B4_3879	0.26	-0.0
4,308,539	-		Pf1N1B4_3879	0.26	-0.9
4,308,539	-		Pf1N1B4_3879	0.26	-1.3
4,308,588	+		Pf1N1B4_3879	0.30	-0.0
4,308,588	+		Pf1N1B4_3879	0.30	-1.0
4,308,588	+		Pf1N1B4_3879	0.30	-0.0
4,308,589	-		Pf1N1B4_3879	0.30	-2.4
4,308,589	-				-1.3
4,308,589	-		Pf1N1B4_3879	0.30	-2.4
4,308,614	-		Pf1N1B4_3879	0.32	-0.0
4,308,677	-		Pf1N1B4_3879	0.36	-0.2
4,308,844	+		Pf1N1B4_3879	0.49	-0.0
4,308,844	+		Pf1N1B4_3879	0.49	-0.0
4,308,845	-		Pf1N1B4_3879	0.49	-0.0
4,308,874	+		Pf1N1B4_3879	0.51	-0.0
4,308,874	+		Pf1N1B4_3879	0.51	-0.0
4,308,875	-		Pf1N1B4_3879	0.51	-0.0
4,308,875	-		Pf1N1B4_3879	0.51	-2.7
4,308,875	-		Pf1N1B4_3879	0.51	-0.0
4,308,875	-		Pf1N1B4_3879	0.51	-0.0
4,308,875	-		Pf1N1B4_3879	0.51	-0.0
4,308,875	-		Pf1N1B4_3879	0.51	-0.5
4,308,875	-		Pf1N1B4_3879	0.51	-0.0
4,308,916	+		Pf1N1B4_3879	0.54	-1.3
4,308,916	+		Pf1N1B4_3879	0.54	+0.5
4,308,917	-		Pf1N1B4_3879	0.54	-0.0
4,308,917	-		Pf1N1B4_3879	0.54	-0.0
4,308,922	+		Pf1N1B4_3879	0.54	+0.1
4,308,922	+		Pf1N1B4_3879	0.54	-0.0
4,308,922	+		Pf1N1B4_3879	0.54	+0.5
4,308,922	+				-0.0
4,308,922	+		Pf1N1B4_3879	0.54	-0.1
4,308,923	-		Pf1N1B4_3879	0.54	-0.0
4,308,923	-		Pf1N1B4_3879	0.54	-0.0
4,308,923	-		Pf1N1B4_3879	0.54	-1.4
4,308,955	+		Pf1N1B4_3879	0.57	-0.3
4,308,956	-		Pf1N1B4_3879	0.57	-0.0
4,308,956	-		Pf1N1B4_3879	0.57	-2.0
4,308,956	-		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	+0.1
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-1.1
4,308,958	+		Pf1N1B4_3879	0.57	-1.9
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,958	+		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,308,959	-		Pf1N1B4_3879	0.57	-0.0
4,309,049	-		Pf1N1B4_3879	0.64	-0.0
4,309,049	-		Pf1N1B4_3879	0.64	-0.0
4,309,057	+		Pf1N1B4_3879	0.64	-0.0
4,309,058	-		Pf1N1B4_3879	0.64	-0.0
4,309,135	+		Pf1N1B4_3879	0.70	-0.0
4,309,135	+		Pf1N1B4_3879	0.70	+0.8
4,309,135	+		Pf1N1B4_3879	0.70	+0.8
4,309,135	+		Pf1N1B4_3879	0.70	+0.6
4,309,135	+		Pf1N1B4_3879	0.70	-0.0
4,309,136	-		Pf1N1B4_3879	0.70	-1.2
4,309,136	-		Pf1N1B4_3879	0.70	-0.2
4,309,136	-		Pf1N1B4_3879	0.70	-0.0
4,309,136	-		Pf1N1B4_3879	0.70	-0.0
4,309,145	+		Pf1N1B4_3879	0.71	-0.0
4,309,146	-		Pf1N1B4_3879	0.71	-1.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.1
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+1.2
4,309,153	+				-0.3
4,309,153	+		Pf1N1B4_3879	0.71	+0.1
4,309,153	+		Pf1N1B4_3879	0.71	+0.6
4,309,153	+		Pf1N1B4_3879	0.71	-0.3
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.6
4,309,153	+		Pf1N1B4_3879	0.71	+1.0
4,309,153	+		Pf1N1B4_3879	0.71	+0.7
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,153	+		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.6
4,309,154	-		Pf1N1B4_3879	0.71	-1.8
4,309,154	-		Pf1N1B4_3879	0.71	-1.6
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.9
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-0.2
4,309,154	-		Pf1N1B4_3879	0.71	-0.0
4,309,154	-		Pf1N1B4_3879	0.71	-1.7
4,309,154	-		Pf1N1B4_3879	0.71	+0.5