Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3849

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
4,269,452	-		Pf1N1B4_3848	0.52	-2.6
4,269,499	-		Pf1N1B4_3848	0.56	-2.8
4,269,528	+		Pf1N1B4_3848	0.58	-1.2
4,269,528	+		Pf1N1B4_3848	0.58	-0.0
4,269,528	+		Pf1N1B4_3848	0.58	-0.0
4,269,529	-		Pf1N1B4_3848	0.58	-0.6
4,269,529	-		Pf1N1B4_3848	0.58	-1.2
4,269,529	-		Pf1N1B4_3848	0.58	-0.0
4,269,707	+		Pf1N1B4_3848	0.73	-0.0
4,269,707	+		Pf1N1B4_3848	0.73	-0.0
4,269,707	+		Pf1N1B4_3848	0.73	-1.3
4,269,707	+		Pf1N1B4_3848	0.73	-1.3
4,269,707	+		Pf1N1B4_3848	0.73	-2.5
4,269,707	+		Pf1N1B4_3848	0.73	-2.3
4,269,707	+		Pf1N1B4_3848	0.73	-1.4
4,269,707	+				-1.1
4,269,708	-		Pf1N1B4_3848	0.73	-0.0
4,269,708	-		Pf1N1B4_3848	0.73	-1.1
4,269,708	-		Pf1N1B4_3848	0.73	-0.0
4,269,708	-		Pf1N1B4_3848	0.73	-0.0
4,269,708	-		Pf1N1B4_3848	0.73	-1.3
4,269,708	-		Pf1N1B4_3848	0.73	-0.0
4,269,708	-		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,709	+		Pf1N1B4_3848	0.73	-0.0
4,269,711	+		Pf1N1B4_3848	0.73	-0.0
4,269,711	+		Pf1N1B4_3848	0.73	-1.8
4,269,711	+		Pf1N1B4_3848	0.73	-0.0
4,269,711	+		Pf1N1B4_3848	0.73	-1.8
4,269,712	-		Pf1N1B4_3848	0.73	-0.0
4,269,712	-		Pf1N1B4_3848	0.73	-0.0
4,269,712	-		Pf1N1B4_3848	0.73	-1.0
4,270,045	+				-0.0
4,270,045	+				-0.0
4,270,045	+				-1.2
4,270,045	+				-2.6
4,270,046	-				-0.0
4,270,046	-				-2.8
4,270,208	-				-2.6
4,270,235	+				-0.0
4,270,259	+				-0.0
4,270,287	+				-0.0
4,270,287	+				-0.0
4,270,288	-				-0.0
4,270,288	-				-1.2
4,270,313	-				-0.0
4,270,337	+				-0.0
4,270,337	+				-0.9
4,270,338	-				-3.7
4,270,338	-				-0.0
4,270,340	+				-0.0
4,270,340	+				-0.0
4,270,340	+				-0.0
4,270,340	+				-0.0
4,270,340	+				-0.0
4,270,340	+				-1.8
4,270,341	-				-0.0
4,270,341	-				-4.1
4,270,341	-				-0.0
4,270,341	-				-0.0
4,270,341	-				-0.0
4,270,459	+				-2.2
4,270,459	+				-3.9
4,270,459	+				-3.8
4,270,467	-		Pf1N1B4_3849	0.11	-2.4
4,270,467	-		Pf1N1B4_3849	0.11	-4.0
4,270,474	+		Pf1N1B4_3849	0.12	-3.9
4,270,474	+		Pf1N1B4_3849	0.12	-0.0
4,270,474	+				-0.0
4,270,474	+		Pf1N1B4_3849	0.12	-0.0
4,270,475	-		Pf1N1B4_3849	0.12	-0.0
4,270,475	-		Pf1N1B4_3849	0.12	-2.3
4,270,922	+		Pf1N1B4_3849	0.70	-1.4
4,270,922	+		Pf1N1B4_3849	0.70	-3.4
4,270,922	+		Pf1N1B4_3849	0.70	-0.0
4,270,952	+		Pf1N1B4_3849	0.74	-2.9
4,270,952	+		Pf1N1B4_3849	0.74	-2.3
4,270,953	-		Pf1N1B4_3849	0.74	-0.0
4,270,953	-		Pf1N1B4_3849	0.74	-0.0
4,271,360	+				-0.0
4,271,360	+				-0.0
4,271,360	+				-1.7
4,271,361	-				-0.0
4,271,361	-				-0.0
4,271,361	-				-1.1
4,271,361	-				-0.0
4,271,401	+				-0.6
4,271,401	+				-2.6
4,271,402	-				-0.0
4,271,402	-				-0.0
4,271,402	-				-0.0
4,271,402	-				-0.0
4,271,444	+				-0.0
4,271,469	-		Pf1N1B4_3850	0.11	-2.4
4,271,533	+		Pf1N1B4_3850	0.16	-0.0
4,271,533	+		Pf1N1B4_3850	0.16	-0.0
4,271,534	-		Pf1N1B4_3850	0.16	-1.5
4,271,564	+		Pf1N1B4_3850	0.18	-0.0
4,271,600	-		Pf1N1B4_3850	0.21	-2.4
4,271,600	-		Pf1N1B4_3850	0.21	-0.0
4,271,600	-		Pf1N1B4_3850	0.21	-0.0
4,271,615	+		Pf1N1B4_3850	0.22	-2.6
4,271,616	-		Pf1N1B4_3850	0.22	-0.0
4,271,616	-				-0.0
4,271,853	-		Pf1N1B4_3850	0.40	-2.1
4,271,861	+		Pf1N1B4_3850	0.41	-0.0
4,271,862	-		Pf1N1B4_3850	0.41	-0.0
4,271,862	-				-2.9
4,271,948	+		Pf1N1B4_3850	0.47	-2.2
4,271,949	-		Pf1N1B4_3850	0.48	-1.8
4,271,949	-		Pf1N1B4_3850	0.48	-2.7
4,271,949	-		Pf1N1B4_3850	0.48	-0.0
4,271,949	-		Pf1N1B4_3850	0.48	-0.0
4,271,949	-		Pf1N1B4_3850	0.48	-2.1
4,272,089	+		Pf1N1B4_3850	0.58	-0.0
4,272,090	-		Pf1N1B4_3850	0.58	-1.4
4,272,090	-		Pf1N1B4_3850	0.58	-2.0
4,272,090	-		Pf1N1B4_3850	0.58	-0.0
4,272,117	-				-0.0
4,272,117	-				-0.0