Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3583

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
3,992,768	+		Pf1N1B4_3582	0.15	-0.4
3,992,769	-		Pf1N1B4_3582	0.15	-0.0
3,992,780	+		Pf1N1B4_3582	0.17	-0.0
3,993,039	+		Pf1N1B4_3582	0.41	-1.3
3,993,263	+		Pf1N1B4_3582	0.62	-0.0
3,993,599	+				-2.5
3,993,599	+				-1.8
3,993,600	-				-0.0
3,993,635	+				-0.0
3,993,636	-				-2.2
3,993,687	-				-0.0
3,993,817	-				-3.3
3,993,817	-		Pf1N1B4_3583	0.17	-2.8
3,993,817	-		Pf1N1B4_3583	0.17	-0.0
3,993,823	-				-0.0
3,993,957	+		Pf1N1B4_3583	0.36	-0.0
3,994,064	+		Pf1N1B4_3583	0.51	-3.7
3,994,065	-		Pf1N1B4_3583	0.51	-2.0
3,994,065	-		Pf1N1B4_3583	0.51	-0.0
3,994,200	+		Pf1N1B4_3583	0.69	-0.0
3,994,228	-		Pf1N1B4_3583	0.73	-0.0
3,994,228	-		Pf1N1B4_3583	0.73	-0.0
3,994,329	+		Pf1N1B4_3583	0.87	-2.6
3,994,330	-		Pf1N1B4_3583	0.87	-0.0
3,994,588	-				-0.7
3,994,590	+				-0.0
3,994,590	+				-1.9
3,994,591	-				-1.5
3,994,591	-				-2.1
3,994,591	-				-2.6
3,994,599	+				-0.0
3,994,600	-				-0.3
3,994,701	+				-0.0
3,994,702	-				-0.0
3,994,702	-				-0.0
3,994,755	+				-0.0
3,994,755	+				-0.0
3,994,755	+				-0.0
3,994,755	+				-2.0
3,994,839	+		Pf1N1B4_3584	0.12	-0.0
3,994,844	+		Pf1N1B4_3584	0.12	-0.0
3,994,844	+		Pf1N1B4_3584	0.12	-1.1
3,994,844	+		Pf1N1B4_3584	0.12	-0.0
3,994,844	+		Pf1N1B4_3584	0.12	-0.0
3,994,845	-		Pf1N1B4_3584	0.12	-0.0
3,994,845	-		Pf1N1B4_3584	0.12	-1.5
3,994,869	+		Pf1N1B4_3584	0.13	-0.0
3,994,869	+		Pf1N1B4_3584	0.13	-0.0
3,994,870	-		Pf1N1B4_3584	0.13	-1.5
3,994,870	-		Pf1N1B4_3584	0.13	-0.0
3,994,887	+		Pf1N1B4_3584	0.14	-1.2
3,994,887	+		Pf1N1B4_3584	0.14	-1.6
3,994,888	-		Pf1N1B4_3584	0.14	-1.2
3,994,888	-		Pf1N1B4_3584	0.14	-0.0
3,994,888	-		Pf1N1B4_3584	0.14	-0.0
3,994,888	-		Pf1N1B4_3584	0.14	-0.9
3,994,888	-		Pf1N1B4_3584	0.14	-1.8
3,994,896	+		Pf1N1B4_3584	0.14	-1.8
3,994,897	-				-0.0
3,994,899	+		Pf1N1B4_3584	0.14	-0.0
3,994,918	+		Pf1N1B4_3584	0.15	-0.0
3,994,965	+				-0.0
3,994,966	-		Pf1N1B4_3584	0.17	-0.0
3,994,977	+		Pf1N1B4_3584	0.17	-1.0
3,994,977	+		Pf1N1B4_3584	0.17	-0.0
3,994,978	-		Pf1N1B4_3584	0.17	-2.5
3,994,978	-		Pf1N1B4_3584	0.17	-1.9
3,994,978	-				-0.0
3,994,978	-		Pf1N1B4_3584	0.17	-0.0
3,994,992	+		Pf1N1B4_3584	0.17	-0.0
3,994,993	-		Pf1N1B4_3584	0.18	-3.1
3,995,028	+		Pf1N1B4_3584	0.19	-1.8
3,995,082	+		Pf1N1B4_3584	0.21	-0.0
3,995,083	-		Pf1N1B4_3584	0.21	-0.0
3,995,083	-		Pf1N1B4_3584	0.21	-0.0
3,995,083	-		Pf1N1B4_3584	0.21	-1.9
3,995,085	+		Pf1N1B4_3584	0.21	-0.0
3,995,085	+		Pf1N1B4_3584	0.21	-1.8
3,995,085	+		Pf1N1B4_3584	0.21	-0.0
3,995,086	-		Pf1N1B4_3584	0.21	-0.0
3,995,086	-		Pf1N1B4_3584	0.21	+1.0
3,995,086	-		Pf1N1B4_3584	0.21	-0.0
3,995,127	+		Pf1N1B4_3584	0.22	-2.3
3,995,127	+		Pf1N1B4_3584	0.22	-1.4
3,995,127	+		Pf1N1B4_3584	0.22	-0.0
3,995,127	+		Pf1N1B4_3584	0.22	-0.0
3,995,128	-		Pf1N1B4_3584	0.22	-0.0
3,995,427	+		Pf1N1B4_3584	0.32	-0.0
3,995,427	+		Pf1N1B4_3584	0.32	-0.0
3,995,427	+		Pf1N1B4_3584	0.32	-0.0
3,995,427	+		Pf1N1B4_3584	0.32	-1.4
3,995,427	+		Pf1N1B4_3584	0.32	-1.6
3,995,427	+		Pf1N1B4_3584	0.32	-1.5