Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3510

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
3,916,491	+				-0.0
3,916,491	+				-0.7
3,916,491	+				-0.0
3,916,492	-				-0.0
3,916,492	-				-1.5
3,916,501	-				-0.0
3,916,501	-				-0.0
3,916,617	+		Pf1N1B4_3509	0.14	-0.0
3,916,617	+		Pf1N1B4_3509	0.14	-0.0
3,916,618	-		Pf1N1B4_3509	0.15	-2.5
3,916,618	-		Pf1N1B4_3509	0.15	-1.9
3,916,698	+		Pf1N1B4_3509	0.24	-1.3
3,916,698	+		Pf1N1B4_3509	0.24	-0.0
3,916,698	+		Pf1N1B4_3509	0.24	-1.4
3,916,698	+		Pf1N1B4_3509	0.24	-0.0
3,916,698	+		Pf1N1B4_3509	0.24	-1.0
3,916,699	-		Pf1N1B4_3509	0.24	-1.8
3,916,699	-		Pf1N1B4_3509	0.24	-1.4
3,916,699	-		Pf1N1B4_3509	0.24	-0.7
3,916,699	-		Pf1N1B4_3509	0.24	-0.0
3,916,701	+		Pf1N1B4_3509	0.24	-0.0
3,916,702	-		Pf1N1B4_3509	0.25	-1.4
3,916,702	-		Pf1N1B4_3509	0.25	-0.0
3,916,702	-		Pf1N1B4_3509	0.25	-0.0
3,916,702	-		Pf1N1B4_3509	0.25	-4.2
3,916,702	-		Pf1N1B4_3509	0.25	-3.1
3,916,702	-		Pf1N1B4_3509	0.25	-0.0
3,916,812	+		Pf1N1B4_3509	0.38	-0.0
3,916,812	+		Pf1N1B4_3509	0.38	-1.0
3,917,248	+				-1.7
3,917,340	+				-1.3
3,917,340	+				-0.1
3,917,340	+				-1.3
3,917,351	+				-0.0
3,917,351	+				-0.0
3,917,352	-				-1.5
3,917,352	-				-0.0
3,917,647	+		Pf1N1B4_3510	0.53	-1.3
3,917,647	+		Pf1N1B4_3510	0.53	-3.5
3,917,647	+		Pf1N1B4_3510	0.53	-2.7
3,917,648	-		Pf1N1B4_3510	0.53	-2.8
3,917,650	+				-1.7
3,917,650	+		Pf1N1B4_3510	0.54	-0.0
3,917,650	+		Pf1N1B4_3510	0.54	-1.7
3,917,650	+		Pf1N1B4_3510	0.54	-2.3
3,917,650	+		Pf1N1B4_3510	0.54	-1.7
3,917,650	+		Pf1N1B4_3510	0.54	-3.8
3,917,651	-		Pf1N1B4_3510	0.54	-0.0
3,917,651	-		Pf1N1B4_3510	0.54	-2.7
3,917,969	+				-2.3
3,918,020	+		Pf1N1B4_3511	0.34	-2.4
3,918,020	+		Pf1N1B4_3511	0.34	-0.0
3,918,020	+		Pf1N1B4_3511	0.34	-0.0
3,918,021	-		Pf1N1B4_3511	0.35	-0.0
3,918,021	-		Pf1N1B4_3511	0.35	-0.0
3,918,021	-		Pf1N1B4_3511	0.35	-0.0
3,918,021	-		Pf1N1B4_3511	0.35	-1.8
3,918,021	-				-1.5
3,918,021	-		Pf1N1B4_3511	0.35	-0.0
3,918,021	-		Pf1N1B4_3511	0.35	-1.4
3,918,021	-				-1.9
3,918,021	-		Pf1N1B4_3511	0.35	-0.0
3,918,076	+		Pf1N1B4_3511	0.71	-0.0
3,918,076	+		Pf1N1B4_3511	0.71	-0.0
3,918,077	-		Pf1N1B4_3511	0.71	-1.4
3,918,077	-		Pf1N1B4_3511	0.71	-2.6
3,918,077	-		Pf1N1B4_3511	0.71	-2.3
3,918,077	-		Pf1N1B4_3511	0.71	-1.5
3,918,077	-		Pf1N1B4_3511	0.71	-0.0
3,918,077	-		Pf1N1B4_3511	0.71	-0.0
3,918,077	-		Pf1N1B4_3511	0.71	-0.0
3,918,077	-		Pf1N1B4_3511	0.71	-0.0
3,918,077	-		Pf1N1B4_3511	0.71	-0.0
3,918,120	+				-0.0
3,918,120	+				-2.6
3,918,120	+				-2.7
3,918,120	+				-0.0
3,918,121	-				-1.8
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-1.3
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-1.9
3,918,121	-				-1.8
3,918,121	-				-2.2
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-1.7
3,918,121	-				-1.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,121	-				-0.0
3,918,142	+				-1.1
3,918,143	-				-0.0
3,918,148	+				-0.0
3,918,148	+				-2.0
3,918,148	+				-1.4
3,918,149	-				-0.0
3,918,149	-				-0.0
3,918,162	-				-2.0
3,918,162	-				-0.0
3,918,178	-				-1.0
3,918,208	+				-2.1
3,918,208	+				-0.0
3,918,209	-				-0.0
3,918,210	+				-0.0
3,918,210	+				-0.0
3,918,295	-				-0.0
3,918,523	-				-0.0
3,918,526	+				-0.0
3,918,527	-				-0.0
3,918,539	-				-1.9
3,918,539	-				-0.0