Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3033

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
3,412,577	+				+0.0
3,412,578	-				-1.5
3,412,578	-				-1.8
3,412,605	+				+0.0
3,412,606	-				-2.5
3,412,795	+		Pf1N1B4_3032	0.34	-0.9
3,412,795	+		Pf1N1B4_3032	0.34	-0.6
3,412,795	+				-0.8
3,412,796	-		Pf1N1B4_3032	0.34	+0.0
3,412,828	+		Pf1N1B4_3032	0.39	-0.7
3,412,828	+		Pf1N1B4_3032	0.39	+0.0
3,412,828	+		Pf1N1B4_3032	0.39	+0.0
3,412,828	+		Pf1N1B4_3032	0.39	-0.4
3,412,828	+		Pf1N1B4_3032	0.39	-1.0
3,412,828	+		Pf1N1B4_3032	0.39	-1.5
3,412,828	+		Pf1N1B4_3032	0.39	+0.0
3,412,828	+		Pf1N1B4_3032	0.39	+0.0
3,412,829	-		Pf1N1B4_3032	0.39	-1.3
3,412,829	-		Pf1N1B4_3032	0.39	-1.2
3,412,829	-		Pf1N1B4_3032	0.39	-0.3
3,412,829	-		Pf1N1B4_3032	0.39	+0.0
3,412,829	-		Pf1N1B4_3032	0.39	-1.8
3,412,829	-		Pf1N1B4_3032	0.39	+0.0
3,412,837	+		Pf1N1B4_3032	0.40	+0.0
3,413,134	+		Pf1N1B4_3032	0.81	+0.0
3,413,134	+		Pf1N1B4_3032	0.81	+0.0
3,413,135	-		Pf1N1B4_3032	0.81	-1.1
3,413,135	-		Pf1N1B4_3032	0.81	+0.0
3,413,135	-		Pf1N1B4_3032	0.81	-1.0
3,413,135	-		Pf1N1B4_3032	0.81	-1.6
3,413,185	+		Pf1N1B4_3032	0.88	+0.0
3,413,185	+		Pf1N1B4_3032	0.88	+0.0
3,413,269	+				+0.0
3,413,270	-				+0.0
3,413,343	+				+0.0
3,413,343	+				-1.2
3,413,343	+				-2.9
3,413,343	+				+0.0
3,413,343	+				-2.0
3,413,343	+				+0.0
3,413,344	-				+0.0
3,413,344	-				+0.0
3,413,344	-				+0.0
3,413,344	-				-3.8
3,413,344	-				+0.0
3,413,344	-				+0.0
3,413,344	-				-1.4
3,413,344	-				-1.3
3,413,462	-				+0.0
3,413,513	+				-0.4
3,413,514	-				+0.0
3,413,514	-				-2.1
3,413,514	-				-1.6
3,413,700	+				+0.0
3,413,700	+				-2.0
3,413,700	+				+0.0
3,413,701	-				+0.0
3,413,701	-				+0.0
3,413,701	-				+0.0
3,413,701	-				-1.9
3,413,701	-				+0.0
3,413,701	-				+0.0
3,413,739	+		Pf1N1B4_3033	0.12	+0.0
3,413,739	+		Pf1N1B4_3033	0.12	-1.2
3,413,740	-		Pf1N1B4_3033	0.12	+0.0
3,413,740	-		Pf1N1B4_3033	0.12	-1.8
3,413,741	+		Pf1N1B4_3033	0.12	+0.0
3,413,741	+		Pf1N1B4_3033	0.12	-2.0
3,413,808	+		Pf1N1B4_3033	0.16	-1.3
3,413,808	+		Pf1N1B4_3033	0.16	-1.6
3,413,808	+		Pf1N1B4_3033	0.16	-1.6
3,413,808	+		Pf1N1B4_3033	0.16	+0.0
3,413,808	+		Pf1N1B4_3033	0.16	-2.7
3,413,808	+		Pf1N1B4_3033	0.16	+0.0
3,413,809	-		Pf1N1B4_3033	0.16	-2.5
3,413,809	-		Pf1N1B4_3033	0.16	-1.5
3,413,809	-		Pf1N1B4_3033	0.16	+0.0
3,413,847	+		Pf1N1B4_3033	0.18	+0.0
3,413,847	+		Pf1N1B4_3033	0.18	+0.0
3,413,848	-		Pf1N1B4_3033	0.18	+0.0
3,413,952	+		Pf1N1B4_3033	0.25	-1.4
3,413,952	+		Pf1N1B4_3033	0.25	-2.8
3,413,952	+		Pf1N1B4_3033	0.25	+0.0
3,413,968	-		Pf1N1B4_3033	0.26	-4.1
3,414,026	+		Pf1N1B4_3033	0.29	-2.4
3,414,750	+		Pf1N1B4_3033	0.74	+0.0
3,414,819	+		Pf1N1B4_3033	0.78	+0.0
3,414,819	+		Pf1N1B4_3033	0.78	+0.0
3,414,819	+		Pf1N1B4_3033	0.78	+0.0
3,414,820	-		Pf1N1B4_3033	0.78	-2.1
3,414,820	-				-0.7
3,414,820	-		Pf1N1B4_3033	0.78	-0.9
3,414,820	-		Pf1N1B4_3033	0.78	+0.0
3,414,820	-		Pf1N1B4_3033	0.78	+0.0
3,415,606	-		Pf1N1B4_3034	0.81	-1.7
3,415,606	-		Pf1N1B4_3034	0.81	+0.0
3,415,659	+				-1.7
3,415,659	+				-1.4
3,415,660	-				+0.0
3,415,660	-				+0.0
3,415,660	-				+0.0
3,415,746	+				+0.0
3,415,747	-				+0.0
3,415,747	-				+0.0
3,415,840	+				+0.0
3,415,841	-		Pf1N1B4_3035	0.11	-1.5
3,415,841	-		Pf1N1B4_3035	0.11	+0.0
3,415,841	-		Pf1N1B4_3035	0.11	-2.6
3,415,984	-		Pf1N1B4_3035	0.22	-2.2
3,416,023	-		Pf1N1B4_3035	0.25	+0.0
3,416,038	+		Pf1N1B4_3035	0.26	+0.0
3,416,039	-		Pf1N1B4_3035	0.26	-1.9
3,416,146	+		Pf1N1B4_3035	0.34	-1.4
3,416,147	-		Pf1N1B4_3035	0.34	+0.0
3,416,147	-		Pf1N1B4_3035	0.34	+0.0
3,416,147	-		Pf1N1B4_3035	0.34	-1.4