Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_296

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_293 and Pf1N1B4_294 overlap by 4 nucleotidesPf1N1B4_294 and Pf1N1B4_295 are separated by 56 nucleotidesPf1N1B4_295 and Pf1N1B4_296 are separated by 10 nucleotidesPf1N1B4_296 and Pf1N1B4_297 overlap by 1 nucleotides Pf1N1B4_293 - hypothetical protein, at 348,207 to 348,329 _293 Pf1N1B4_294 - FIG00953861: hypothetical protein, at 348,326 to 348,619 _294 Pf1N1B4_295 - Arylesterase precursor (EC 3.1.1.2), at 348,676 to 349,281 _295 Pf1N1B4_296 - ABC transporter ATP-binding protein YvcR, at 349,292 to 349,975 _296 Pf1N1B4_297 - FIG00809136: hypothetical protein, at 349,975 to 352,479 _297 Position (kb) 349 350Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 348.327 kb on + strandat 348.327 kb on + strandat 348.327 kb on + strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.328 kb on - strandat 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.841 kb on + strand, within Pf1N1B4_295at 348.842 kb on - strand, within Pf1N1B4_295at 348.863 kb on + strand, within Pf1N1B4_295at 348.875 kb on + strand, within Pf1N1B4_295at 348.875 kb on + strand, within Pf1N1B4_295at 348.875 kb on + strand, within Pf1N1B4_295at 348.875 kb on + strand, within Pf1N1B4_295at 348.876 kb on - strand, within Pf1N1B4_295at 348.876 kb on - strand, within Pf1N1B4_295at 348.876 kb on - strand, within Pf1N1B4_295at 348.876 kb on - strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.029 kb on + strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.030 kb on - strand, within Pf1N1B4_295at 349.107 kb on + strand, within Pf1N1B4_295at 349.107 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.191 kb on + strand, within Pf1N1B4_295at 349.192 kb on - strand, within Pf1N1B4_295at 349.192 kb on - strand, within Pf1N1B4_295at 349.192 kb on - strand, within Pf1N1B4_295at 349.192 kb on - strand, within Pf1N1B4_295at 349.192 kb on - strand, within Pf1N1B4_295at 349.194 kb on + strand, within Pf1N1B4_295at 349.194 kb on + strand, within Pf1N1B4_295at 349.195 kb on - strand, within Pf1N1B4_295at 349.360 kb on + strandat 349.361 kb on - strandat 349.605 kb on + strand, within Pf1N1B4_296at 349.605 kb on + strand, within Pf1N1B4_296at 349.606 kb on - strand, within Pf1N1B4_296at 349.606 kb on - strand, within Pf1N1B4_296at 350.024 kb on + strandat 350.024 kb on + strandat 350.024 kb on + strandat 350.024 kb on + strandat 350.024 kb on + strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.025 kb on - strandat 350.107 kb on + strandat 350.171 kb on + strandat 350.171 kb on + strandat 350.171 kb on + strandat 350.171 kb on + strandat 350.171 kb on + strandat 350.171 kb on + strandat 350.172 kb on - strandat 350.172 kb on - strandat 350.172 kb on - strandat 350.172 kb on - strandat 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.503 kb on + strand, within Pf1N1B4_297at 350.504 kb on - strand, within Pf1N1B4_297at 350.504 kb on - strand, within Pf1N1B4_297at 350.504 kb on - strand, within Pf1N1B4_297at 350.530 kb on + strand, within Pf1N1B4_297at 350.530 kb on + strand, within Pf1N1B4_297at 350.530 kb on + strand, within Pf1N1B4_297at 350.654 kb on - strand, within Pf1N1B4_297at 350.755 kb on + strand, within Pf1N1B4_297at 350.755 kb on + strand, within Pf1N1B4_297at 350.755 kb on + strand, within Pf1N1B4_297at 350.756 kb on - strand, within Pf1N1B4_297at 350.912 kb on + strand, within Pf1N1B4_297

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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348,327 + -1.1
348,327 + -1.5
348,327 + -1.2
348,328 - -0.0
348,328 - -0.0
348,328 - -0.0
348,328 - -5.0
348,328 - -1.1
348,328 - -0.0
348,328 - -0.0
348,841 + Pf1N1B4_295 0.27 -1.6
348,841 + Pf1N1B4_295 0.27 -1.1
348,841 + Pf1N1B4_295 0.27 -0.0
348,841 + Pf1N1B4_295 0.27 -0.0
348,841 + Pf1N1B4_295 0.27 -0.0
348,841 + Pf1N1B4_295 0.27 -0.0
348,841 + Pf1N1B4_295 0.27 -1.0
348,841 + Pf1N1B4_295 0.27 -0.8
348,842 - Pf1N1B4_295 0.27 -1.1
348,863 + Pf1N1B4_295 0.31 -1.5
348,875 + Pf1N1B4_295 0.33 -0.0
348,875 + Pf1N1B4_295 0.33 -1.6
348,875 + Pf1N1B4_295 0.33 -1.1
348,875 + Pf1N1B4_295 0.33 -1.7
348,876 - Pf1N1B4_295 0.33 -1.8
348,876 - Pf1N1B4_295 0.33 -0.0
348,876 - Pf1N1B4_295 0.33 -0.0
348,876 - Pf1N1B4_295 0.33 -0.0
349,029 + Pf1N1B4_295 0.58 -1.7
349,029 + Pf1N1B4_295 0.58 -0.0
349,029 + Pf1N1B4_295 0.58 -1.6
349,029 + Pf1N1B4_295 0.58 -1.1
349,029 + Pf1N1B4_295 0.58 -2.9
349,029 + Pf1N1B4_295 0.58 -0.5
349,029 + Pf1N1B4_295 0.58 -0.0
349,029 + Pf1N1B4_295 0.58 -1.0
349,029 + Pf1N1B4_295 0.58 -1.5
349,030 - Pf1N1B4_295 0.58 -0.0
349,030 - Pf1N1B4_295 0.58 -0.0
349,030 - Pf1N1B4_295 0.58 -1.5
349,030 - Pf1N1B4_295 0.58 -0.0
349,030 - Pf1N1B4_295 0.58 -1.3
349,030 - Pf1N1B4_295 0.58 -0.0
349,030 - Pf1N1B4_295 0.58 -0.0
349,107 + Pf1N1B4_295 0.71 -0.0
349,107 + Pf1N1B4_295 0.71 -1.5
349,191 + Pf1N1B4_295 0.85 -1.7
349,191 + Pf1N1B4_295 0.85 -0.0
349,191 + Pf1N1B4_295 0.85 -1.3
349,191 + Pf1N1B4_295 0.85 -0.0
349,191 + Pf1N1B4_295 0.85 -0.0
349,191 + Pf1N1B4_295 0.85 -0.8
349,191 + Pf1N1B4_295 0.85 +0.2
349,192 - Pf1N1B4_295 0.85 -1.8
349,192 - Pf1N1B4_295 0.85 -0.0
349,192 - Pf1N1B4_295 0.85 -0.0
349,192 - Pf1N1B4_295 0.85 -1.7
349,192 - Pf1N1B4_295 0.85 -0.0
349,194 + Pf1N1B4_295 0.85 -0.0
349,194 + Pf1N1B4_295 0.85 -1.3
349,195 - Pf1N1B4_295 0.86 -0.0
349,360 + -0.1
349,361 - -0.0
349,605 + Pf1N1B4_296 0.46 -0.0
349,605 + Pf1N1B4_296 0.46 -0.4
349,606 - Pf1N1B4_296 0.46 -0.0
349,606 - Pf1N1B4_296 0.46 -0.0
350,024 + -1.8
350,024 + -0.0
350,024 + -1.9
350,024 + -0.0
350,024 + -1.4
350,025 - -0.0
350,025 - -0.0
350,025 - -2.2
350,025 - -0.0
350,025 - -1.0
350,025 - -0.0
350,025 - -0.0
350,025 - -0.0
350,107 + -0.0
350,171 + -1.2
350,171 + -0.0
350,171 + -0.8
350,171 + -0.0
350,171 + -1.2
350,171 + -0.0
350,172 - -1.2
350,172 - -0.0
350,172 - -0.0
350,172 - -0.0
350,503 + Pf1N1B4_297 0.21 -1.0
350,503 + Pf1N1B4_297 0.21 -0.5
350,503 + Pf1N1B4_297 0.21 -0.6
350,503 + Pf1N1B4_297 0.21 -0.7
350,503 + Pf1N1B4_297 0.21 -0.0
350,503 + Pf1N1B4_297 0.21 -2.1
350,503 + Pf1N1B4_297 0.21 -0.0
350,503 + Pf1N1B4_297 0.21 -1.9
350,504 - Pf1N1B4_297 0.21 -0.9
350,504 - Pf1N1B4_297 0.21 -0.0
350,504 - Pf1N1B4_297 0.21 -0.8
350,530 + Pf1N1B4_297 0.22 -2.0
350,530 + Pf1N1B4_297 0.22 -1.6
350,530 + Pf1N1B4_297 0.22 -1.2
350,654 - Pf1N1B4_297 0.27 -2.0
350,755 + Pf1N1B4_297 0.31 -1.2
350,755 + Pf1N1B4_297 0.31 -0.0
350,755 + Pf1N1B4_297 0.31 -0.3
350,756 - Pf1N1B4_297 0.31 -2.3
350,912 + Pf1N1B4_297 0.37 -0.0

Or see this region's nucleotide sequence