Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2745

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
3,082,780	+		Pf1N1B4_2744	0.19	+0.0
3,082,781	-		Pf1N1B4_2744	0.19	+0.2
3,082,810	+		Pf1N1B4_2744	0.23	+0.0
3,082,849	+		Pf1N1B4_2744	0.28	+0.0
3,082,849	+		Pf1N1B4_2744	0.28	+0.0
3,082,849	+		Pf1N1B4_2744	0.28	-1.0
3,082,849	+		Pf1N1B4_2744	0.28	+0.0
3,082,850	-		Pf1N1B4_2744	0.28	+0.0
3,083,032	+		Pf1N1B4_2744	0.52	+0.0
3,083,032	+		Pf1N1B4_2744	0.52	-1.3
3,083,032	+		Pf1N1B4_2744	0.52	+0.0
3,083,032	+		Pf1N1B4_2744	0.52	-2.0
3,083,032	+		Pf1N1B4_2744	0.52	-1.4
3,083,032	+		Pf1N1B4_2744	0.52	+0.0
3,083,032	+				-1.1
3,083,032	+		Pf1N1B4_2744	0.52	+0.0
3,083,033	-				-1.2
3,083,033	-		Pf1N1B4_2744	0.52	+0.0
3,083,033	-		Pf1N1B4_2744	0.52	+0.0
3,083,195	-		Pf1N1B4_2744	0.73	-0.8
3,083,195	-		Pf1N1B4_2744	0.73	+0.0
3,083,400	+				+0.0
3,083,400	+				+0.0
3,083,400	+				+0.0
3,083,401	-				-1.7
3,083,401	-				-1.2
3,083,439	-				+0.0
3,083,481	-				+0.0
3,083,481	-				-0.7
3,083,482	+				+0.0
3,083,504	-				+0.0
3,083,504	-				+0.0
3,083,554	-				-0.2
3,083,653	+		Pf1N1B4_2745	0.12	-1.6
3,083,654	-		Pf1N1B4_2745	0.12	-0.5
3,083,654	-		Pf1N1B4_2745	0.12	+0.0
3,083,654	-		Pf1N1B4_2745	0.12	+0.0
3,083,654	-		Pf1N1B4_2745	0.12	+0.0
3,083,679	+		Pf1N1B4_2745	0.15	+0.0
3,083,698	+		Pf1N1B4_2745	0.17	+0.0
3,083,699	-				+0.0
3,083,804	+		Pf1N1B4_2745	0.28	-2.6
3,083,804	+		Pf1N1B4_2745	0.28	+0.0
3,083,805	-		Pf1N1B4_2745	0.28	+0.0
3,084,058	+		Pf1N1B4_2745	0.55	+0.0
3,084,058	+		Pf1N1B4_2745	0.55	-1.4
3,084,058	+		Pf1N1B4_2745	0.55	+0.0
3,084,058	+		Pf1N1B4_2745	0.55	+0.0
3,084,058	+		Pf1N1B4_2745	0.55	-2.3
3,084,059	-		Pf1N1B4_2745	0.55	-3.8
3,084,132	+		Pf1N1B4_2745	0.63	-1.3
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,132	+		Pf1N1B4_2745	0.63	+0.0
3,084,133	-		Pf1N1B4_2745	0.63	+0.0
3,084,133	-		Pf1N1B4_2745	0.63	+0.0
3,084,133	-		Pf1N1B4_2745	0.63	+0.0
3,084,133	-		Pf1N1B4_2745	0.63	+0.0
3,084,357	+		Pf1N1B4_2745	0.87	-1.9
3,084,474	+				+0.0
3,084,487	+				-1.1
3,084,513	+				+0.0
3,084,513	+				+0.0
3,084,513	+				-1.3
3,084,513	+				-1.9
3,084,513	+				+1.6
3,084,513	+				+0.0
3,084,513	+				+0.0
3,084,513	+				+0.0
3,084,513	+				-2.5
3,084,514	-				-1.1
3,084,514	-				-1.3
3,084,514	-				-1.2
3,084,514	-				-1.6
3,084,514	-				+0.0
3,084,514	-				+0.0
3,084,514	-				-1.0
3,084,514	-				+0.0
3,084,537	+				+0.0
3,084,537	+				+0.0
3,084,537	+				+0.0
3,084,537	+				+0.0
3,084,538	-				+0.0
3,084,538	-				+0.0
3,084,538	-				-2.4
3,084,551	+				-1.6
3,084,551	+				+0.0
3,084,552	-				-1.8
3,084,552	-				+0.0
3,084,552	-				+0.0
3,084,552	-				+0.0
3,084,563	+				+0.0
3,084,570	+				+0.0
3,084,570	+				-0.8
3,084,570	+				+0.0
3,084,570	+				+0.0
3,084,570	+				-1.4
3,084,570	+				-1.2
3,084,570	+				-0.4
3,084,570	+				+0.0
3,084,571	-				+0.0
3,084,571	-				+0.0
3,084,571	-				+0.0
3,084,571	-				+0.0
3,084,571	-				-3.2
3,084,571	-				+0.0
3,084,571	-				+0.0
3,084,571	-				-0.6
3,084,571	-				+0.0
3,084,687	+		Pf1N1B4_2746	0.16	-1.8
3,084,688	-		Pf1N1B4_2746	0.16	+0.0
3,084,688	-		Pf1N1B4_2746	0.16	+0.0
3,084,924	+				-1.3
3,084,925	-		Pf1N1B4_2746	0.34	+0.0
3,084,925	-		Pf1N1B4_2746	0.34	+0.0
3,084,925	-		Pf1N1B4_2746	0.34	+0.0
3,084,943	+		Pf1N1B4_2746	0.35	-1.6
3,084,944	-		Pf1N1B4_2746	0.35	+0.0
3,084,975	+		Pf1N1B4_2746	0.38	+0.0
3,084,975	+		Pf1N1B4_2746	0.38	-2.8
3,084,975	+		Pf1N1B4_2746	0.38	+0.0
3,084,975	+		Pf1N1B4_2746	0.38	-2.6
3,084,976	-		Pf1N1B4_2746	0.38	+0.0
3,084,976	-		Pf1N1B4_2746	0.38	-3.2
3,084,976	-		Pf1N1B4_2746	0.38	-2.5
3,084,976	-		Pf1N1B4_2746	0.38	+0.0
3,084,976	-		Pf1N1B4_2746	0.38	-1.2
3,085,005	+		Pf1N1B4_2746	0.40	+0.0
3,085,006	-		Pf1N1B4_2746	0.40	+0.0
3,085,006	-		Pf1N1B4_2746	0.40	-2.0
3,085,006	-		Pf1N1B4_2746	0.40	+0.0
3,085,011	+		Pf1N1B4_2746	0.40	+0.0
3,085,011	+		Pf1N1B4_2746	0.40	+0.0
3,085,011	+		Pf1N1B4_2746	0.40	-2.0
3,085,011	+		Pf1N1B4_2746	0.40	+0.0
3,085,011	+		Pf1N1B4_2746	0.40	+0.0
3,085,012	-		Pf1N1B4_2746	0.40	-1.7
3,085,012	-		Pf1N1B4_2746	0.40	-1.7
3,085,012	-		Pf1N1B4_2746	0.40	+0.0
3,085,012	-		Pf1N1B4_2746	0.40	-3.7
3,085,012	-		Pf1N1B4_2746	0.40	-1.5
3,085,012	-		Pf1N1B4_2746	0.40	-1.9
3,085,131	+		Pf1N1B4_2746	0.49	+0.0
3,085,131	+		Pf1N1B4_2746	0.49	+0.0
3,085,132	-		Pf1N1B4_2746	0.49	+0.0
3,085,132	-		Pf1N1B4_2746	0.49	+0.0
3,085,132	-		Pf1N1B4_2746	0.49	+0.0
3,085,179	+		Pf1N1B4_2746	0.53	+0.0
3,085,430	-		Pf1N1B4_2746	0.72	+0.0