Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2545

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,886,571	+		Pf1N1B4_2544	0.13	-0.0
2,886,740	+		Pf1N1B4_2544	0.34	-0.0
2,886,740	+		Pf1N1B4_2544	0.34	-0.0
2,886,740	+		Pf1N1B4_2544	0.34	-0.0
2,886,740	+		Pf1N1B4_2544	0.34	-0.0
2,886,741	-		Pf1N1B4_2544	0.34	-0.0
2,886,741	-		Pf1N1B4_2544	0.34	-1.9
2,886,741	-		Pf1N1B4_2544	0.34	-1.9
2,886,741	-		Pf1N1B4_2544	0.34	-0.2
2,886,741	-				-0.0
2,886,770	+		Pf1N1B4_2544	0.37	-0.0
2,886,838	+		Pf1N1B4_2544	0.46	-1.4
2,886,839	-		Pf1N1B4_2544	0.46	-2.2
2,886,890	+		Pf1N1B4_2544	0.52	-0.0
2,886,890	+		Pf1N1B4_2544	0.52	-0.0
2,886,890	+		Pf1N1B4_2544	0.52	-3.4
2,886,890	+		Pf1N1B4_2544	0.52	-0.0
2,886,891	-		Pf1N1B4_2544	0.52	-0.0
2,886,891	-		Pf1N1B4_2544	0.52	-0.5
2,886,891	-		Pf1N1B4_2544	0.52	-0.0
2,886,928	+		Pf1N1B4_2544	0.57	-0.9
2,886,928	+		Pf1N1B4_2544	0.57	-0.0
2,886,929	-		Pf1N1B4_2544	0.57	-0.0
2,887,067	+		Pf1N1B4_2544	0.74	-0.0
2,887,067	+		Pf1N1B4_2544	0.74	-3.2
2,887,067	+		Pf1N1B4_2544	0.74	-0.0
2,887,067	+		Pf1N1B4_2544	0.74	-1.2
2,887,068	-		Pf1N1B4_2544	0.74	-0.0
2,887,068	-		Pf1N1B4_2544	0.74	-0.0
2,887,073	+		Pf1N1B4_2544	0.74	-0.0
2,887,073	+		Pf1N1B4_2544	0.74	-0.0
2,887,073	+		Pf1N1B4_2544	0.74	-0.8
2,887,074	-		Pf1N1B4_2544	0.74	-0.0
2,887,074	-		Pf1N1B4_2544	0.74	-1.2
2,887,074	-		Pf1N1B4_2544	0.74	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-				-1.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-				-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-3.8
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,138	-		Pf1N1B4_2544	0.82	-0.0
2,887,170	+		Pf1N1B4_2544	0.86	-2.2
2,887,170	+		Pf1N1B4_2544	0.86	-0.0
2,887,170	+		Pf1N1B4_2544	0.86	-1.1
2,887,170	+		Pf1N1B4_2544	0.86	-0.0
2,887,170	+		Pf1N1B4_2544	0.86	-0.0
2,887,171	-		Pf1N1B4_2544	0.86	-0.0
2,887,171	-				-0.0
2,887,452	+				-0.0
2,887,452	+				-0.0
2,887,452	+				-3.5
2,887,453	-				-0.0
2,887,453	-				-2.0
2,887,482	+				-0.0
2,887,482	+				-0.0
2,887,482	+				-1.6
2,887,716	+		Pf1N1B4_2545	0.24	-0.0
2,887,725	+		Pf1N1B4_2545	0.25	-0.0
2,887,740	+		Pf1N1B4_2545	0.26	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-3.9
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-3.0
2,888,058	+		Pf1N1B4_2545	0.48	-3.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-2.2
2,888,058	+		Pf1N1B4_2545	0.48	-0.0
2,888,058	+		Pf1N1B4_2545	0.48	-4.7
2,888,058	+		Pf1N1B4_2545	0.48	-1.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-3.1
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,059	-		Pf1N1B4_2545	0.48	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-2.3
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-2.9
2,888,102	+		Pf1N1B4_2545	0.51	-2.6
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-4.7
2,888,102	+		Pf1N1B4_2545	0.51	-0.0
2,888,102	+		Pf1N1B4_2545	0.51	-4.3
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	+1.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-1.4
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,103	-		Pf1N1B4_2545	0.51	-0.0
2,888,139	+		Pf1N1B4_2545	0.53	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-2.6
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-4.9
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-3.9
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-1.6
2,888,172	+		Pf1N1B4_2545	0.55	-4.4
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-4.5
2,888,172	+		Pf1N1B4_2545	0.55	-3.8
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-2.7
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,172	+		Pf1N1B4_2545	0.55	-1.8
2,888,172	+		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-2.9
2,888,173	-		Pf1N1B4_2545	0.55	-3.1
2,888,173	-		Pf1N1B4_2545	0.55	-3.9
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,173	-		Pf1N1B4_2545	0.55	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-3.5
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-5.9
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-3.0
2,888,178	+		Pf1N1B4_2545	0.56	-2.9
2,888,178	+		Pf1N1B4_2545	0.56	-4.6
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-4.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,178	+		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-2.8
2,888,179	-		Pf1N1B4_2545	0.56	-2.6
2,888,179	-		Pf1N1B4_2545	0.56	-4.5
2,888,179	-		Pf1N1B4_2545	0.56	-2.9
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-4.3
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-5.7
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-0.0
2,888,179	-		Pf1N1B4_2545	0.56	-3.1
2,888,179	-		Pf1N1B4_2545	0.56	-4.1
2,888,227	+		Pf1N1B4_2545	0.59	-5.0
2,888,227	+		Pf1N1B4_2545	0.59	-4.2
2,888,228	-		Pf1N1B4_2545	0.59	-4.0
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-0.0
2,888,494	+		Pf1N1B4_2545	0.77	-4.4
2,888,495	-		Pf1N1B4_2545	0.77	-0.0
2,888,619	+		Pf1N1B4_2545	0.85	-0.0
2,888,637	+		Pf1N1B4_2545	0.87	-4.3
2,888,637	+		Pf1N1B4_2545	0.87	-0.0
2,888,845	+				-0.0
2,888,845	+				-0.0
2,888,846	-				-2.8
2,888,955	-				-0.0
2,888,955	-				-0.0
2,888,991	-				-0.6
2,889,005	-				-0.0
2,889,149	+				-0.0
2,889,150	-				-0.0
2,889,150	-				-0.0
2,889,150	-				-0.0
2,889,151	+				-0.0
2,889,164	+				-0.0
2,889,165	-				-1.6
2,889,202	-		Pf1N1B4_2546	0.10	-0.0
2,889,202	-		Pf1N1B4_2546	0.10	-0.0
2,889,202	-		Pf1N1B4_2546	0.10	-1.5
2,889,202	-		Pf1N1B4_2546	0.10	-2.6
2,889,241	+		Pf1N1B4_2546	0.12	-0.0
2,889,241	+		Pf1N1B4_2546	0.12	-0.0
2,889,242	-		Pf1N1B4_2546	0.13	-1.6
2,889,252	+		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,253	-		Pf1N1B4_2546	0.13	-0.0
2,889,277	+		Pf1N1B4_2546	0.14	-0.0
2,889,278	-		Pf1N1B4_2546	0.14	-0.0
2,889,391	+		Pf1N1B4_2546	0.20	-1.4
2,889,392	-		Pf1N1B4_2546	0.20	-0.0
2,889,448	+		Pf1N1B4_2546	0.23	-0.0
2,889,448	+		Pf1N1B4_2546	0.23	-1.4
2,889,448	+		Pf1N1B4_2546	0.23	-0.0
2,889,449	-		Pf1N1B4_2546	0.23	-0.0
2,889,454	-		Pf1N1B4_2546	0.24	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-2.3
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,547	+		Pf1N1B4_2546	0.29	-0.0
2,889,548	-		Pf1N1B4_2546	0.29	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	+1.0
2,889,625	+		Pf1N1B4_2546	0.33	-2.1
2,889,625	+		Pf1N1B4_2546	0.33	-1.4
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+		Pf1N1B4_2546	0.33	-0.0
2,889,625	+				-1.2
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-				-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-1.7
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-0.0
2,889,626	-		Pf1N1B4_2546	0.33	-1.0
2,889,629	+		Pf1N1B4_2546	0.33	-0.0
2,889,629	+		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,630	-		Pf1N1B4_2546	0.33	-0.0
2,889,640	+		Pf1N1B4_2546	0.33	-0.0
2,889,653	+		Pf1N1B4_2546	0.34	-0.0
2,889,654	-		Pf1N1B4_2546	0.34	-0.0
2,889,679	+		Pf1N1B4_2546	0.35	-0.0
2,889,680	-		Pf1N1B4_2546	0.35	-0.8