Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2536

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,875,425	-		Pf1N1B4_2535	0.16	-0.0
2,875,445	+		Pf1N1B4_2535	0.18	-0.0
2,875,446	-		Pf1N1B4_2535	0.18	-0.0
2,875,447	+		Pf1N1B4_2535	0.18	-0.0
2,875,447	+		Pf1N1B4_2535	0.18	+1.0
2,875,447	+		Pf1N1B4_2535	0.18	-1.3
2,875,447	+		Pf1N1B4_2535	0.18	-1.8
2,875,447	+		Pf1N1B4_2535	0.18	-0.0
2,875,447	+		Pf1N1B4_2535	0.18	-1.1
2,875,447	+		Pf1N1B4_2535	0.18	-2.9
2,875,447	+		Pf1N1B4_2535	0.18	-1.5
2,875,447	+		Pf1N1B4_2535	0.18	-0.0
2,875,447	+		Pf1N1B4_2535	0.18	-1.7
2,875,447	+		Pf1N1B4_2535	0.18	-0.0
2,875,447	+		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-1.3
2,875,448	-		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-2.7
2,875,448	-		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-0.0
2,875,448	-		Pf1N1B4_2535	0.18	-2.9
2,875,448	-		Pf1N1B4_2535	0.18	-1.5
2,875,511	+		Pf1N1B4_2535	0.25	-0.0
2,875,512	-		Pf1N1B4_2535	0.25	-1.7
2,875,576	+		Pf1N1B4_2535	0.31	-1.8
2,875,577	-		Pf1N1B4_2535	0.31	-2.5
2,875,622	+		Pf1N1B4_2535	0.36	-0.0
2,875,623	-		Pf1N1B4_2535	0.36	-0.0
2,875,623	-		Pf1N1B4_2535	0.36	-1.4
2,875,623	-		Pf1N1B4_2535	0.36	-0.0
2,875,838	+		Pf1N1B4_2535	0.58	-0.0
2,875,838	+				-0.0
2,875,973	+		Pf1N1B4_2535	0.71	-0.0
2,875,973	+		Pf1N1B4_2535	0.71	-0.6
2,875,974	-		Pf1N1B4_2535	0.71	-1.4
2,876,106	-		Pf1N1B4_2535	0.85	-0.0
2,876,106	-		Pf1N1B4_2535	0.85	-0.0
2,876,280	+				-2.7
2,876,280	+				-0.0
2,876,281	-				-1.7
2,876,293	+				-0.0
2,876,294	-				-1.1
2,876,308	+				-0.9
2,876,308	+				-0.0
2,876,308	+				-0.0
2,876,309	-				-0.0
2,876,309	-				-1.5
2,876,309	-				-0.0
2,876,309	-				-1.8
2,876,309	-				-1.0
2,876,309	-				-0.0
2,876,369	+				-3.8
2,876,498	-				-0.1
2,876,498	-				-0.0
2,876,506	+				-5.1
2,876,506	+				-0.0
2,876,506	+				-0.0
2,876,507	-				-3.2
2,876,507	-				-0.0
2,876,596	-		Pf1N1B4_2536	0.11	-0.0
2,876,596	-		Pf1N1B4_2536	0.11	-3.0
2,876,599	+		Pf1N1B4_2536	0.11	-0.0
2,876,710	+		Pf1N1B4_2536	0.16	-0.0
2,876,710	+		Pf1N1B4_2536	0.16	-0.0
2,876,710	+		Pf1N1B4_2536	0.16	-3.5
2,876,710	+		Pf1N1B4_2536	0.16	-0.0
2,876,710	+		Pf1N1B4_2536	0.16	-4.8
2,876,710	+		Pf1N1B4_2536	0.16	-0.0
2,876,710	+		Pf1N1B4_2536	0.16	-0.0
2,876,711	-		Pf1N1B4_2536	0.16	-0.0
2,876,711	-		Pf1N1B4_2536	0.16	-0.0
2,876,711	-		Pf1N1B4_2536	0.16	-0.0
2,876,711	-		Pf1N1B4_2536	0.16	-2.7
2,876,827	+		Pf1N1B4_2536	0.21	-3.9
2,876,827	+				-0.0
2,876,828	-		Pf1N1B4_2536	0.21	-0.0
2,876,842	+		Pf1N1B4_2536	0.21	-5.2
2,876,842	+		Pf1N1B4_2536	0.21	-2.6
2,876,842	+		Pf1N1B4_2536	0.21	-0.0
2,876,842	+		Pf1N1B4_2536	0.21	-0.0
2,876,843	-		Pf1N1B4_2536	0.21	-0.0
2,876,888	+		Pf1N1B4_2536	0.23	-0.0
2,876,888	+		Pf1N1B4_2536	0.23	-0.0
2,877,382	+		Pf1N1B4_2536	0.44	-0.0
2,877,616	+		Pf1N1B4_2536	0.54	-0.0
2,877,616	+		Pf1N1B4_2536	0.54	-0.0
2,877,616	+		Pf1N1B4_2536	0.54	+1.0
2,877,628	+		Pf1N1B4_2536	0.54	-0.0
2,877,772	+		Pf1N1B4_2536	0.60	-1.8
2,877,772	+		Pf1N1B4_2536	0.60	-0.0
2,877,772	+		Pf1N1B4_2536	0.60	-0.0
2,877,773	-		Pf1N1B4_2536	0.60	-0.0
2,877,773	-		Pf1N1B4_2536	0.60	-0.0
2,877,877	+		Pf1N1B4_2536	0.64	-4.1
2,877,878	-		Pf1N1B4_2536	0.64	-0.0
2,877,878	-		Pf1N1B4_2536	0.64	-3.5
2,877,878	-		Pf1N1B4_2536	0.64	-0.0
2,877,878	-		Pf1N1B4_2536	0.64	-2.8
2,877,878	-		Pf1N1B4_2536	0.64	-1.6
2,878,009	+		Pf1N1B4_2536	0.70	-0.0
2,878,009	+		Pf1N1B4_2536	0.70	-3.3
2,878,009	+		Pf1N1B4_2536	0.70	-0.0
2,878,009	+		Pf1N1B4_2536	0.70	-4.0
2,878,009	+		Pf1N1B4_2536	0.70	-3.0
2,878,009	+		Pf1N1B4_2536	0.70	-3.0
2,878,010	-		Pf1N1B4_2536	0.70	-0.0
2,878,010	-		Pf1N1B4_2536	0.70	-0.0
2,878,010	-		Pf1N1B4_2536	0.70	-2.1
2,878,010	-		Pf1N1B4_2536	0.70	-1.6
2,878,512	+				-0.0
2,878,512	+				-0.0
2,878,512	+				-0.0
2,878,512	+				-0.0
2,878,513	-				-0.0
2,878,513	-				-0.0
2,878,577	+				-0.0
2,878,578	-				-0.0
2,878,661	+				-0.0
2,878,661	+				-0.0
2,878,662	-				-0.0
2,878,662	-				-1.5
2,878,689	+				-0.0
2,878,689	+				-0.0
2,878,689	+				-0.0
2,878,790	+				-0.0
2,878,790	+				-1.1
2,878,791	-				-1.4
2,878,847	-				-0.0
2,878,847	-				-0.0
2,878,864	+				-0.0
2,878,864	+				-0.0
2,878,864	+				-1.7
2,878,864	+				-0.0
2,878,864	+				-2.0
2,878,864	+				-0.0
2,878,864	+				-0.0
2,878,865	-				-0.0
2,878,865	-				-0.0
2,878,865	-				-0.0
2,878,865	-				-0.0
2,878,865	-				-0.0
2,878,865	-				-0.0
2,878,894	+				-0.0
2,878,894	+				-0.0
2,878,894	+				-0.0
2,878,895	-				-0.0
2,878,895	-				-0.0
2,879,046	-		Pf1N1B4_2537	0.27	-3.7
2,879,046	-		Pf1N1B4_2537	0.27	-0.0
2,879,185	-		Pf1N1B4_2537	0.49	-0.0
2,879,253	+		Pf1N1B4_2537	0.59	-1.7
2,879,254	-		Pf1N1B4_2537	0.60	-0.0
2,879,254	-		Pf1N1B4_2537	0.60	-0.0
2,879,487	+				-0.0
2,879,487	+				-1.5
2,879,488	-				-0.0
2,879,488	-				-0.0
2,879,488	-				-0.0
2,879,653	-				-2.3
2,879,717	-				-0.0
2,879,717	-				-0.0