Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2338

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,653,756	+		Pf1N1B4_2336	0.26	-1.8
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+				-0.3
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,757	-		Pf1N1B4_2336	0.27	-0.0
2,653,757	-		Pf1N1B4_2336	0.27	-0.0
2,653,759	+		Pf1N1B4_2336	0.27	-1.8
2,653,856	+				-0.8
2,653,857	-		Pf1N1B4_2336	0.50	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-2.0
2,653,963	+		Pf1N1B4_2336	0.74	-2.5
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,964	-		Pf1N1B4_2336	0.74	-1.5
2,653,964	-		Pf1N1B4_2336	0.74	-1.7
2,654,048	+				-0.0
2,654,049	-				-2.1
2,654,049	-				-1.9
2,654,052	+				-1.5
2,654,052	+				-0.0
2,654,053	-				-0.0
2,654,064	+				-0.0
2,654,064	+				-0.0
2,654,165	+		Pf1N1B4_2337	0.10	+0.6
2,654,174	-		Pf1N1B4_2337	0.12	-0.0
2,654,180	+		Pf1N1B4_2337	0.13	-2.4
2,654,180	+		Pf1N1B4_2337	0.13	-3.6
2,654,180	+		Pf1N1B4_2337	0.13	-1.6
2,654,180	+		Pf1N1B4_2337	0.13	-0.0
2,654,181	-		Pf1N1B4_2337	0.13	-3.2
2,654,181	-		Pf1N1B4_2337	0.13	-0.0
2,654,307	+		Pf1N1B4_2337	0.33	-2.3
2,654,307	+		Pf1N1B4_2337	0.33	-0.0
2,654,307	+		Pf1N1B4_2337	0.33	-0.0
2,654,308	-		Pf1N1B4_2337	0.33	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+				-0.0
2,654,317	-		Pf1N1B4_2337	0.35	-1.5
2,654,317	-		Pf1N1B4_2337	0.35	-3.8
2,654,451	+		Pf1N1B4_2337	0.56	+1.0
2,654,739	+				-0.0
2,654,739	+				-0.0
2,654,741	+				-0.0
2,654,741	+				-3.4
2,654,742	-				-0.0
2,654,752	+				-5.1
2,654,752	+				-1.0
2,654,752	+				-0.0
2,654,752	+				-0.0
2,654,752	+				-4.6
2,654,752	+				-3.6
2,654,752	+				-0.0
2,654,752	+				-3.8
2,654,752	+				-3.8
2,654,753	-				-0.0
2,654,753	-				-0.0
2,654,773	+				-0.0
2,654,773	+				-3.8
2,654,773	+				-0.0
2,654,773	+				-0.0
2,654,993	-		Pf1N1B4_2338	0.23	-3.3
2,654,993	-		Pf1N1B4_2338	0.23	-0.0
2,654,993	-		Pf1N1B4_2338	0.23	-0.0
2,655,019	+		Pf1N1B4_2338	0.25	-4.6
2,655,019	+		Pf1N1B4_2338	0.25	-0.0
2,655,019	+		Pf1N1B4_2338	0.25	-0.0
2,655,019	+		Pf1N1B4_2338	0.25	-0.0
2,655,019	+		Pf1N1B4_2338	0.25	-1.4
2,655,020	-		Pf1N1B4_2338	0.25	-0.0
2,655,020	-		Pf1N1B4_2338	0.25	-4.4
2,655,062	-		Pf1N1B4_2338	0.29	-0.0
2,655,070	+		Pf1N1B4_2338	0.30	-0.0
2,655,070	+		Pf1N1B4_2338	0.30	-0.0
2,655,070	+		Pf1N1B4_2338	0.30	-0.0
2,655,070	+		Pf1N1B4_2338	0.30	-0.0
2,655,071	-		Pf1N1B4_2338	0.30	-0.0
2,655,071	-		Pf1N1B4_2338	0.30	-0.0
2,655,106	+		Pf1N1B4_2338	0.33	-0.0
2,655,106	+		Pf1N1B4_2338	0.33	-3.7
2,655,107	-		Pf1N1B4_2338	0.33	-3.1
2,655,107	-		Pf1N1B4_2338	0.33	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-4.4
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,169	+		Pf1N1B4_2338	0.39	-0.0
2,655,170	-		Pf1N1B4_2338	0.39	-1.6
2,655,170	-		Pf1N1B4_2338	0.39	-3.8
2,655,170	-		Pf1N1B4_2338	0.39	-0.0
2,655,170	-		Pf1N1B4_2338	0.39	-0.0
2,655,569	+		Pf1N1B4_2338	0.74	-0.0
2,655,569	+				-0.0
2,655,569	+		Pf1N1B4_2338	0.74	-1.0
2,655,570	-		Pf1N1B4_2338	0.74	-5.4
2,655,745	+		Pf1N1B4_2338	0.89	-0.0
2,655,745	+		Pf1N1B4_2338	0.89	-0.0
2,655,746	-		Pf1N1B4_2338	0.89	-0.0
2,655,754	+		Pf1N1B4_2338	0.90	-0.0
2,655,754	+		Pf1N1B4_2338	0.90	-0.0
2,655,754	+		Pf1N1B4_2338	0.90	-0.0
2,655,766	+				-0.0
2,655,766	+				-0.0
2,655,766	+				-0.0
2,655,766	+				-0.0
2,655,766	+				-0.0
2,655,767	-				-0.0
2,655,767	-				-0.0
2,655,897	+				-0.0
2,655,897	+				-3.3
2,655,897	+				-0.0
2,655,897	+				-0.0
2,655,898	-				-1.0
2,655,898	-				-2.0
2,655,903	+				-0.0
2,655,903	+				-0.0
2,656,201	+		Pf1N1B4_2339	0.50	-0.0
2,656,202	-		Pf1N1B4_2339	0.50	-0.0
2,656,202	-		Pf1N1B4_2339	0.50	-0.7
2,656,202	-		Pf1N1B4_2339	0.50	-0.0
2,656,342	+				-0.0
2,656,342	+				-0.0
2,656,342	+				-1.0
2,656,343	-				-0.0
2,656,343	-				-0.9
2,656,343	-				-1.2
2,656,343	-				-0.0
2,656,386	+				-0.0
2,656,386	+				-1.6
2,656,386	+				-0.4
2,656,387	-				-0.0
2,656,387	-				-0.0
2,656,387	-				-0.0
2,656,387	-				-0.0
2,656,387	-				-0.0
2,656,387	-				-0.0
2,656,389	+				-1.8