Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2335

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,652,117	+		Pf1N1B4_2334	0.22	-0.0
2,652,118	-		Pf1N1B4_2334	0.23	-0.0
2,652,235	+		Pf1N1B4_2334	0.32	-0.0
2,652,279	+				-0.0
2,652,502	+		Pf1N1B4_2334	0.54	-2.2
2,652,822	+		Pf1N1B4_2334	0.81	-0.0
2,652,870	+		Pf1N1B4_2334	0.85	-2.8
2,652,870	+		Pf1N1B4_2334	0.85	-0.0
2,652,871	-		Pf1N1B4_2334	0.85	-0.0
2,652,921	+		Pf1N1B4_2334	0.89	-2.5
2,652,922	-		Pf1N1B4_2334	0.89	-0.0
2,652,957	+				-0.0
2,652,957	+				-0.0
2,652,957	+				-0.0
2,652,958	-				-1.8
2,652,958	-				-2.0
2,652,958	-				-0.0
2,653,125	+		Pf1N1B4_2335	0.13	-0.0
2,653,125	+		Pf1N1B4_2335	0.13	-2.9
2,653,126	-		Pf1N1B4_2335	0.13	-0.0
2,653,126	-		Pf1N1B4_2335	0.13	-0.0
2,653,126	-		Pf1N1B4_2335	0.13	-0.0
2,653,126	-		Pf1N1B4_2335	0.13	-0.0
2,653,389	-		Pf1N1B4_2335	0.57	-2.3
2,653,389	-		Pf1N1B4_2335	0.57	-3.0
2,653,389	-		Pf1N1B4_2335	0.57	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-1.8
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+				-0.3
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,756	+		Pf1N1B4_2336	0.26	-0.0
2,653,757	-		Pf1N1B4_2336	0.27	-0.0
2,653,757	-		Pf1N1B4_2336	0.27	-0.0
2,653,759	+		Pf1N1B4_2336	0.27	-1.8
2,653,856	+				-0.8
2,653,857	-		Pf1N1B4_2336	0.50	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-2.0
2,653,963	+		Pf1N1B4_2336	0.74	-2.5
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,963	+		Pf1N1B4_2336	0.74	-0.0
2,653,964	-		Pf1N1B4_2336	0.74	-1.5
2,653,964	-		Pf1N1B4_2336	0.74	-1.7
2,654,048	+				-0.0
2,654,049	-				-2.1
2,654,049	-				-1.9
2,654,052	+				-1.5
2,654,052	+				-0.0
2,654,053	-				-0.0
2,654,064	+				-0.0
2,654,064	+				-0.0
2,654,165	+		Pf1N1B4_2337	0.10	+0.6
2,654,174	-		Pf1N1B4_2337	0.12	-0.0
2,654,180	+		Pf1N1B4_2337	0.13	-2.4
2,654,180	+		Pf1N1B4_2337	0.13	-3.6
2,654,180	+		Pf1N1B4_2337	0.13	-1.6
2,654,180	+		Pf1N1B4_2337	0.13	-0.0
2,654,181	-		Pf1N1B4_2337	0.13	-3.2
2,654,181	-		Pf1N1B4_2337	0.13	-0.0
2,654,307	+		Pf1N1B4_2337	0.33	-2.3
2,654,307	+		Pf1N1B4_2337	0.33	-0.0
2,654,307	+		Pf1N1B4_2337	0.33	-0.0
2,654,308	-		Pf1N1B4_2337	0.33	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+		Pf1N1B4_2337	0.34	-0.0
2,654,316	+				-0.0
2,654,317	-		Pf1N1B4_2337	0.35	-1.5
2,654,317	-		Pf1N1B4_2337	0.35	-3.8
2,654,451	+		Pf1N1B4_2337	0.56	+1.0