Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2303

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,621,257	+		Pf1N1B4_2302	0.43	-0.0
2,621,257	+		Pf1N1B4_2302	0.43	-0.0
2,621,257	+		Pf1N1B4_2302	0.43	-1.8
2,621,257	+		Pf1N1B4_2302	0.43	-0.4
2,621,257	+		Pf1N1B4_2302	0.43	-0.0
2,621,257	+		Pf1N1B4_2302	0.43	-0.0
2,621,257	+				-0.0
2,621,258	-		Pf1N1B4_2302	0.43	-0.0
2,621,258	-		Pf1N1B4_2302	0.43	-0.0
2,621,261	-		Pf1N1B4_2302	0.43	-0.0
2,621,261	-		Pf1N1B4_2302	0.43	-0.0
2,621,261	-		Pf1N1B4_2302	0.43	-2.3
2,621,329	+		Pf1N1B4_2302	0.49	-0.0
2,621,329	+		Pf1N1B4_2302	0.49	-0.0
2,621,329	+		Pf1N1B4_2302	0.49	-0.0
2,621,329	+		Pf1N1B4_2302	0.49	-0.0
2,621,329	+		Pf1N1B4_2302	0.49	-0.0
2,621,330	-		Pf1N1B4_2302	0.50	-2.5
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,362	+		Pf1N1B4_2302	0.53	-0.0
2,621,363	-		Pf1N1B4_2302	0.53	-0.8
2,621,363	-		Pf1N1B4_2302	0.53	-0.0
2,621,420	-		Pf1N1B4_2302	0.58	-0.0
2,621,420	-		Pf1N1B4_2302	0.58	-0.0
2,621,420	-		Pf1N1B4_2302	0.58	-0.0
2,621,425	+		Pf1N1B4_2302	0.58	-1.8
2,621,426	-		Pf1N1B4_2302	0.59	-0.0
2,621,527	+		Pf1N1B4_2302	0.68	-0.0
2,621,527	+		Pf1N1B4_2302	0.68	-0.0
2,621,528	-		Pf1N1B4_2302	0.68	-0.0
2,621,528	-		Pf1N1B4_2302	0.68	-0.0
2,621,566	+		Pf1N1B4_2302	0.72	-0.0
2,621,566	+		Pf1N1B4_2302	0.72	-1.8
2,621,620	+		Pf1N1B4_2302	0.77	-0.0
2,621,620	+		Pf1N1B4_2302	0.77	-0.0
2,621,621	-		Pf1N1B4_2302	0.77	-0.0
2,621,621	-		Pf1N1B4_2302	0.77	-1.9
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+				-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,680	+		Pf1N1B4_2302	0.82	-0.0
2,621,681	-		Pf1N1B4_2302	0.83	-0.0
2,621,681	-		Pf1N1B4_2302	0.83	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-1.8
2,621,749	+		Pf1N1B4_2302	0.89	-3.0
2,621,749	+				-1.6
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.5
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,749	+		Pf1N1B4_2302	0.89	-1.7
2,621,749	+		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-2.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.3
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-1.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-1.9
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-0.0
2,621,750	-		Pf1N1B4_2302	0.89	-1.0
2,621,919	+				-0.0
2,621,919	+				-0.0
2,621,919	+				-0.0
2,621,919	+				-2.9
2,621,920	-				-1.7
2,621,920	-				-1.1
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,923	+				-0.0
2,621,924	-				-0.0
2,621,924	-				-0.0
2,621,924	-				-0.0
2,621,924	-				-3.0
2,621,930	+				-0.0
2,621,930	+				-0.0
2,621,931	-				-1.4
2,621,931	-				-0.0
2,621,931	-				+1.0
2,622,141	+				-0.0
2,622,141	+				-1.4
2,622,142	-				-1.2
2,622,145	+				-0.0
2,622,145	+				-2.8
2,622,145	+				-0.4
2,622,145	+				-0.0
2,622,145	+				-1.3
2,622,145	+				-0.0
2,622,146	-				-0.0
2,622,146	-				-0.0
2,622,146	-				-0.0
2,622,146	-				-0.0
2,622,146	-				-2.4
2,622,146	-				-0.0
2,622,148	+				-0.0
2,622,148	+				-0.0
2,622,148	+				-0.0
2,622,148	+				-0.0
2,622,148	+				-0.0
2,622,149	-				-0.0
2,622,149	-				-0.0
2,622,149	-				-0.0
2,622,173	+				-3.4
2,622,173	+				-0.0
2,622,173	+				-0.0
2,622,173	+				-4.9
2,622,173	+				-4.7
2,622,173	+				-0.0
2,622,173	+				-0.0
2,622,173	+				-0.0
2,622,174	-				-0.0
2,622,174	-				-0.0
2,622,174	-				-1.0
2,622,174	-				-1.7
2,622,174	-				-0.0
2,622,174	-				-0.0
2,622,174	-				-0.0
2,622,214	+				-0.0
2,622,214	+				-0.0
2,622,214	+				-3.2
2,622,214	+				-0.0
2,622,214	+				-0.0
2,622,215	-				-1.8
2,622,215	-				-0.0
2,622,215	-				-0.0
2,622,215	-				-0.0
2,622,239	+				-0.0
2,622,239	+				-3.0
2,622,240	-				-2.0
2,622,240	-				-3.6
2,622,240	-				-0.0
2,622,240	-				-0.0
2,622,240	-				-0.0
2,622,240	-				-0.0
2,622,240	-				-4.6
2,622,240	-				-3.3
2,622,502	+		Pf1N1B4_2303	0.19	-0.8
2,622,502	+		Pf1N1B4_2303	0.19	-1.4
2,622,502	+		Pf1N1B4_2303	0.19	-0.0
2,622,502	+		Pf1N1B4_2303	0.19	-0.0
2,622,502	+		Pf1N1B4_2303	0.19	-0.0
2,622,503	-		Pf1N1B4_2303	0.19	-0.0
2,622,503	-		Pf1N1B4_2303	0.19	-3.8
2,622,503	-		Pf1N1B4_2303	0.19	-1.6
2,622,503	-		Pf1N1B4_2303	0.19	-3.4
2,622,503	-		Pf1N1B4_2303	0.19	-0.0
2,622,503	-		Pf1N1B4_2303	0.19	-0.0
2,622,503	-		Pf1N1B4_2303	0.19	-3.5
2,622,556	+		Pf1N1B4_2303	0.22	-0.0
2,622,609	+		Pf1N1B4_2303	0.25	-0.0
2,622,610	-		Pf1N1B4_2303	0.25	-0.0
2,622,718	+		Pf1N1B4_2303	0.31	-4.4
2,622,719	-		Pf1N1B4_2303	0.31	-0.8
2,622,748	+		Pf1N1B4_2303	0.33	-0.0
2,622,749	-		Pf1N1B4_2303	0.33	-3.1
2,622,749	-		Pf1N1B4_2303	0.33	-0.0
2,622,749	-		Pf1N1B4_2303	0.33	-0.0
2,622,749	-		Pf1N1B4_2303	0.33	-1.3
2,622,749	-		Pf1N1B4_2303	0.33	-3.3
2,623,033	+		Pf1N1B4_2303	0.48	-4.1
2,623,033	+		Pf1N1B4_2303	0.48	-0.0
2,623,033	+		Pf1N1B4_2303	0.48	-0.0
2,623,033	+		Pf1N1B4_2303	0.48	-3.6
2,623,033	+		Pf1N1B4_2303	0.48	-1.1
2,623,034	-		Pf1N1B4_2303	0.48	-1.6
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,034	-		Pf1N1B4_2303	0.48	-1.9
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,034	-		Pf1N1B4_2303	0.48	-0.0
2,623,071	+		Pf1N1B4_2303	0.50	-0.0
2,623,071	+		Pf1N1B4_2303	0.50	-0.0
2,623,071	+		Pf1N1B4_2303	0.50	-1.5
2,623,071	+		Pf1N1B4_2303	0.50	-2.4
2,623,071	+		Pf1N1B4_2303	0.50	-4.0
2,623,071	+		Pf1N1B4_2303	0.50	-2.5
2,623,071	+		Pf1N1B4_2303	0.50	-3.2
2,623,072	-		Pf1N1B4_2303	0.50	-4.8
2,623,072	-		Pf1N1B4_2303	0.50	-0.0
2,623,072	-		Pf1N1B4_2303	0.50	-3.7
2,623,072	-		Pf1N1B4_2303	0.50	-0.0
2,623,072	-		Pf1N1B4_2303	0.50	-0.0
2,623,255	+				-3.5
2,623,255	+		Pf1N1B4_2303	0.60	-0.0
2,623,256	-		Pf1N1B4_2303	0.60	-0.0
2,623,256	-		Pf1N1B4_2303	0.60	-3.6
2,623,256	-		Pf1N1B4_2303	0.60	-0.0
2,623,256	-		Pf1N1B4_2303	0.60	-0.0
2,623,256	-		Pf1N1B4_2303	0.60	-0.0
2,623,258	+		Pf1N1B4_2303	0.60	-0.0
2,623,258	+				-3.6
2,623,258	+		Pf1N1B4_2303	0.60	-4.3
2,623,258	+		Pf1N1B4_2303	0.60	-0.0
2,623,259	-		Pf1N1B4_2303	0.60	-1.0
2,623,259	-		Pf1N1B4_2303	0.60	-0.0
2,623,436	+		Pf1N1B4_2303	0.70	-0.0
2,623,437	-		Pf1N1B4_2303	0.70	-0.0
2,623,444	+		Pf1N1B4_2303	0.70	-2.6
2,623,672	+		Pf1N1B4_2303	0.83	-0.0
2,623,672	+		Pf1N1B4_2303	0.83	-3.2
2,623,672	+		Pf1N1B4_2303	0.83	-4.0
2,623,672	+		Pf1N1B4_2303	0.83	-0.0
2,623,672	+		Pf1N1B4_2303	0.83	-4.3
2,623,672	+		Pf1N1B4_2303	0.83	-4.0
2,623,672	+		Pf1N1B4_2303	0.83	-1.1
2,623,672	+		Pf1N1B4_2303	0.83	-2.1
2,623,672	+		Pf1N1B4_2303	0.83	-2.4
2,623,672	+		Pf1N1B4_2303	0.83	-2.2
2,623,672	+		Pf1N1B4_2303	0.83	-0.0
2,623,672	+		Pf1N1B4_2303	0.83	-3.0
2,623,672	+		Pf1N1B4_2303	0.83	-2.6
2,623,672	+		Pf1N1B4_2303	0.83	-0.0
2,623,672	+		Pf1N1B4_2303	0.83	-0.0
2,623,672	+		Pf1N1B4_2303	0.83	-3.2
2,623,672	+		Pf1N1B4_2303	0.83	-4.2
2,623,672	+		Pf1N1B4_2303	0.83	-4.3
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-3.8
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-4.1
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-				-4.1
2,623,673	-		Pf1N1B4_2303	0.83	-5.4
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-3.9
2,623,673	-		Pf1N1B4_2303	0.83	-3.7
2,623,673	-		Pf1N1B4_2303	0.83	-3.8
2,623,673	-		Pf1N1B4_2303	0.83	-3.4
2,623,673	-		Pf1N1B4_2303	0.83	-1.7
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,673	-		Pf1N1B4_2303	0.83	-4.1
2,623,673	-		Pf1N1B4_2303	0.83	-0.0
2,623,714	+		Pf1N1B4_2303	0.85	-0.0
2,623,714	+		Pf1N1B4_2303	0.85	-4.3
2,623,714	+		Pf1N1B4_2303	0.85	-0.0
2,623,715	-		Pf1N1B4_2303	0.85	-0.0
2,623,715	-		Pf1N1B4_2303	0.85	-0.0
2,624,014	+				-2.0
2,624,014	+				-0.0
2,624,014	+				-2.7
2,624,037	+				-0.0
2,624,037	+				-4.5
2,624,037	+				-0.0
2,624,037	+				-0.0
2,624,037	+				-3.4
2,624,037	+				-0.0
2,624,037	+				-0.0
2,624,037	+				-0.0
2,624,037	+				-2.3
2,624,037	+				-5.5
2,624,037	+				-2.2
2,624,037	+				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,038	-				-0.0
2,624,126	+				-0.0
2,624,126	+				-0.0
2,624,127	-				-0.0
2,624,127	-				-1.0
2,624,167	+				-0.0
2,624,168	-				-0.0
2,624,168	-				-0.0
2,624,341	+				-0.0
2,624,572	+		Pf1N1B4_2304	0.27	-0.0
2,624,572	+		Pf1N1B4_2304	0.27	-0.0
2,624,572	+		Pf1N1B4_2304	0.27	-1.4
2,624,572	+		Pf1N1B4_2304	0.27	-3.2
2,624,573	-		Pf1N1B4_2304	0.27	-0.0
2,624,573	-		Pf1N1B4_2304	0.27	-0.0
2,624,573	-		Pf1N1B4_2304	0.27	-0.0
2,624,573	-		Pf1N1B4_2304	0.27	-0.0
2,624,680	+		Pf1N1B4_2304	0.35	-2.5
2,624,681	-		Pf1N1B4_2304	0.36	-1.0
2,624,681	-		Pf1N1B4_2304	0.36	-0.0
2,624,681	-		Pf1N1B4_2304	0.36	-0.0
2,624,692	+		Pf1N1B4_2304	0.36	-0.0
2,624,692	+		Pf1N1B4_2304	0.36	-1.6
2,624,692	+		Pf1N1B4_2304	0.36	-0.0
2,624,692	+		Pf1N1B4_2304	0.36	-0.0
2,624,695	-		Pf1N1B4_2304	0.37	-0.0
2,624,695	-		Pf1N1B4_2304	0.37	-0.0
2,624,695	-		Pf1N1B4_2304	0.37	-2.0
2,624,695	-		Pf1N1B4_2304	0.37	-1.1
2,624,713	+		Pf1N1B4_2304	0.38	-0.0
2,624,713	+		Pf1N1B4_2304	0.38	-0.0
2,624,713	+		Pf1N1B4_2304	0.38	-1.5
2,624,717	+		Pf1N1B4_2304	0.38	-0.0
2,624,719	+		Pf1N1B4_2304	0.39	-0.0
2,624,719	+		Pf1N1B4_2304	0.39	-0.0
2,624,719	+		Pf1N1B4_2304	0.39	-0.0
2,624,719	+		Pf1N1B4_2304	0.39	-1.3
2,624,720	-		Pf1N1B4_2304	0.39	-0.0
2,624,762	+		Pf1N1B4_2304	0.42	-0.0
2,624,848	+		Pf1N1B4_2304	0.49	-3.5
2,624,849	-		Pf1N1B4_2304	0.49	-0.0
2,624,849	-		Pf1N1B4_2304	0.49	-1.9
2,624,925	+		Pf1N1B4_2304	0.56	-0.0
2,624,925	+		Pf1N1B4_2304	0.56	-0.0