Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2281

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
2,595,651	+		Pf1N1B4_2280	0.38	-3.6
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,651	+		Pf1N1B4_2280	0.38	-0.0
2,595,652	-		Pf1N1B4_2280	0.38	-1.6
2,595,652	-		Pf1N1B4_2280	0.38	-0.0
2,595,819	+		Pf1N1B4_2280	0.49	-5.0
2,595,819	+		Pf1N1B4_2280	0.49	-3.7
2,595,819	+		Pf1N1B4_2280	0.49	-0.0
2,595,820	-		Pf1N1B4_2280	0.49	-0.0
2,595,820	-		Pf1N1B4_2280	0.49	-3.8
2,595,824	-		Pf1N1B4_2280	0.49	-0.0
2,595,876	-		Pf1N1B4_2280	0.53	-3.4
2,595,879	+		Pf1N1B4_2280	0.53	-3.9
2,595,880	-		Pf1N1B4_2280	0.53	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-3.5
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-0.0
2,595,942	+		Pf1N1B4_2280	0.57	-3.6
2,595,942	+		Pf1N1B4_2280	0.57	-2.8
2,595,942	+		Pf1N1B4_2280	0.57	-3.8
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,595,943	-				-0.0
2,595,943	-		Pf1N1B4_2280	0.57	-0.0
2,596,152	+		Pf1N1B4_2280	0.71	-0.0
2,596,152	+		Pf1N1B4_2280	0.71	-3.6
2,596,159	-		Pf1N1B4_2280	0.71	-0.0
2,596,310	+		Pf1N1B4_2280	0.81	-0.0
2,596,310	+		Pf1N1B4_2280	0.81	-0.0
2,596,471	+				-0.0
2,596,471	+				-2.9
2,596,546	-				-0.0
2,596,546	-				-0.0
2,596,573	-				-3.6
2,596,573	-				-2.9
2,596,665	-				-0.0
2,596,665	-				-2.9
2,596,665	-				-0.0
2,596,760	+		Pf1N1B4_2281	0.26	-0.0
2,596,761	-		Pf1N1B4_2281	0.26	-0.0
2,596,761	-		Pf1N1B4_2281	0.26	-2.7
2,596,761	-		Pf1N1B4_2281	0.26	-2.0
2,596,761	-		Pf1N1B4_2281	0.26	-0.0
2,596,900	-		Pf1N1B4_2281	0.54	-0.0
2,596,900	-		Pf1N1B4_2281	0.54	-2.9
2,596,982	+		Pf1N1B4_2281	0.71	-0.0
2,597,121	+				-3.9
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-3.6
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-1.4
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-3.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.5
2,597,121	+				-1.5
2,597,121	+				-0.7
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-0.0
2,597,121	+				-1.4
2,597,121	+				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-1.6
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-3.0
2,597,122	-				-0.0
2,597,122	-				-1.5
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-1.0
2,597,122	-				-1.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,122	-				-0.0
2,597,125	+				-1.5
2,597,125	+				-0.0
2,597,126	-				-0.0
2,597,126	-				-2.4
2,597,126	-				-1.1
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-0.0
2,597,126	-				-1.4
2,597,305	+		Pf1N1B4_2282	0.19	-0.0
2,597,305	+		Pf1N1B4_2282	0.19	-2.5
2,597,305	+		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-0.0
2,597,306	-		Pf1N1B4_2282	0.19	-1.7
2,597,306	-		Pf1N1B4_2282	0.19	-5.2
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-3.4
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,311	+		Pf1N1B4_2282	0.20	-4.4
2,597,311	+		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-1.9
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-0.0
2,597,312	-		Pf1N1B4_2282	0.20	-1.3
2,597,312	-		Pf1N1B4_2282	0.20	-2.0
2,597,312	-		Pf1N1B4_2282	0.20	-2.6
2,597,312	-		Pf1N1B4_2282	0.20	-3.0
2,597,596	+		Pf1N1B4_2282	0.64	-0.0
2,597,596	+		Pf1N1B4_2282	0.64	-0.0
2,597,596	+		Pf1N1B4_2282	0.64	-0.0
2,597,596	+		Pf1N1B4_2282	0.64	-0.0
2,597,596	+		Pf1N1B4_2282	0.64	-2.6
2,597,596	+		Pf1N1B4_2282	0.64	-0.0
2,597,597	-		Pf1N1B4_2282	0.64	-0.0
2,597,597	-		Pf1N1B4_2282	0.64	-2.1
2,597,665	+		Pf1N1B4_2282	0.74	-0.0
2,597,665	+		Pf1N1B4_2282	0.74	-2.9
2,597,695	+		Pf1N1B4_2282	0.79	-3.3
2,597,695	+		Pf1N1B4_2282	0.79	-0.0
2,597,695	+		Pf1N1B4_2282	0.79	-0.0
2,597,695	+		Pf1N1B4_2282	0.79	-0.0
2,597,696	-		Pf1N1B4_2282	0.79	-0.0
2,597,696	-		Pf1N1B4_2282	0.79	-1.9
2,597,704	+		Pf1N1B4_2282	0.80	-2.8
2,597,704	+		Pf1N1B4_2282	0.80	-0.0
2,597,704	+		Pf1N1B4_2282	0.80	-0.0
2,597,705	-		Pf1N1B4_2282	0.80	-0.0
2,597,728	+		Pf1N1B4_2282	0.84	-0.0
2,597,728	+		Pf1N1B4_2282	0.84	-3.0
2,597,728	+		Pf1N1B4_2282	0.84	-2.2
2,597,728	+		Pf1N1B4_2282	0.84	-0.0
2,597,728	+		Pf1N1B4_2282	0.84	-3.1
2,597,729	-		Pf1N1B4_2282	0.84	-0.0
2,597,764	+		Pf1N1B4_2282	0.89	-5.5
2,597,764	+		Pf1N1B4_2282	0.89	-0.0
2,597,764	+		Pf1N1B4_2282	0.89	-0.0
2,597,765	-		Pf1N1B4_2282	0.89	-0.0
2,597,765	-		Pf1N1B4_2282	0.89	-0.0
2,597,820	+				-3.2
2,597,835	+				-0.0
2,597,835	+				-0.0
2,597,835	+				-0.0
2,597,841	+				-1.6
2,597,842	-				-0.4
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-2.9
2,597,901	+				-2.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-2.5
2,597,901	+				-0.0
2,597,901	+				-1.8
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-4.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-4.4
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-0.0
2,597,901	+				-5.2
2,597,902	-				-0.0
2,597,902	-				-0.0
2,597,902	-				-0.0
2,597,902	-				-0.0
2,597,906	+				-1.2
2,597,906	+				-2.4
2,597,906	+				-1.9
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-3.6
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-2.6
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-2.8
2,597,906	+				-2.1
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-3.7
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-0.0
2,597,906	+				-2.6
2,597,906	+				-2.5
2,597,906	+				-0.0
2,597,906	+				-3.0
2,597,906	+				-2.3
2,597,906	+				-0.0
2,597,906	+				-2.8
2,597,906	+				-0.0
2,597,907	-				-0.4
2,597,907	-				-1.3
2,597,907	-				-0.0
2,597,907	-				-0.0
2,597,907	-				-0.0