Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1725

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
1,970,645	+				-2.1
1,970,645	+				-0.8
1,970,645	+				-0.0
1,970,646	-				-0.0
1,970,686	+				-0.0
1,970,687	-				-0.0
1,970,809	-		Pf1N1B4_1724	0.17	-0.0
1,970,809	-		Pf1N1B4_1724	0.17	-2.0
1,970,933	+		Pf1N1B4_1724	0.29	-0.0
1,971,015	+		Pf1N1B4_1724	0.37	-0.0
1,971,016	-		Pf1N1B4_1724	0.38	-3.4
1,971,386	+		Pf1N1B4_1724	0.75	-0.0
1,971,386	+		Pf1N1B4_1724	0.75	-0.0
1,971,387	-		Pf1N1B4_1724	0.75	-3.2
1,971,387	-		Pf1N1B4_1724	0.75	-0.0
1,971,387	-		Pf1N1B4_1724	0.75	-0.0
1,971,387	-		Pf1N1B4_1724	0.75	-0.0
1,971,638	+				+1.5
1,971,638	+				-2.9
1,971,638	+				-0.1
1,971,638	+				-0.1
1,971,638	+				-0.1
1,971,638	+				-2.8
1,971,639	-				-0.1
1,971,639	-				-0.1
1,971,639	-				-0.1
1,971,639	-				-0.1
1,971,639	-				-0.1
1,971,673	-				-0.1
1,971,761	+		Pf1N1B4_1725	0.16	-3.0
1,971,761	+		Pf1N1B4_1725	0.16	-0.1
1,971,761	+		Pf1N1B4_1725	0.16	-1.7
1,971,762	-		Pf1N1B4_1725	0.16	-0.1
1,971,762	-		Pf1N1B4_1725	0.16	-0.1
1,971,762	-		Pf1N1B4_1725	0.16	-0.1
1,971,770	+		Pf1N1B4_1725	0.17	-3.0
1,971,770	+		Pf1N1B4_1725	0.17	-0.1
1,971,770	+		Pf1N1B4_1725	0.17	-3.4
1,971,770	+		Pf1N1B4_1725	0.17	-2.7
1,971,771	-		Pf1N1B4_1725	0.17	-0.1
1,971,771	-		Pf1N1B4_1725	0.17	-2.7
1,971,771	-		Pf1N1B4_1725	0.17	-0.1
1,971,771	-		Pf1N1B4_1725	0.17	-0.1
1,971,771	-		Pf1N1B4_1725	0.17	-0.1
1,971,884	+		Pf1N1B4_1725	0.31	-0.1
1,971,884	+		Pf1N1B4_1725	0.31	-3.3
1,971,884	+		Pf1N1B4_1725	0.31	-4.2
1,971,884	+		Pf1N1B4_1725	0.31	-3.0
1,971,884	+		Pf1N1B4_1725	0.31	-0.1
1,971,885	-		Pf1N1B4_1725	0.31	-0.1
1,971,885	-		Pf1N1B4_1725	0.31	-0.9
1,971,885	-		Pf1N1B4_1725	0.31	-0.1
1,972,132	+		Pf1N1B4_1725	0.62	-3.7
1,972,132	+		Pf1N1B4_1725	0.62	-0.1
1,972,132	+		Pf1N1B4_1725	0.62	-0.1
1,972,132	+		Pf1N1B4_1725	0.62	-2.8
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-3.2
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-3.1
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-2.6
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-3.5
1,972,133	-		Pf1N1B4_1725	0.62	-2.3
1,972,133	-				-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-3.6
1,972,133	-		Pf1N1B4_1725	0.62	-3.2
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-2.0
1,972,133	-		Pf1N1B4_1725	0.62	-2.5
1,972,133	-		Pf1N1B4_1725	0.62	-0.1
1,972,133	-		Pf1N1B4_1725	0.62	-3.2
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-2.9
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,136	+		Pf1N1B4_1725	0.63	-3.7
1,972,136	+		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-2.8
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-3.2
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-0.1
1,972,137	-		Pf1N1B4_1725	0.63	-2.9
1,972,137	-		Pf1N1B4_1725	0.63	-3.5
1,972,217	+		Pf1N1B4_1725	0.73	-0.1
1,972,218	-		Pf1N1B4_1725	0.73	-0.1
1,972,218	-		Pf1N1B4_1725	0.73	-2.9
1,972,491	+				-0.1
1,972,491	+				-0.1
1,972,492	-				-0.1
1,972,592	+				-0.1
1,972,592	+				-0.1
1,972,592	+				-0.1
1,972,593	-				-4.3
1,972,593	-				-0.1
1,972,617	+		Pf1N1B4_1726	0.12	-0.1
1,972,618	-		Pf1N1B4_1726	0.12	-0.1
1,972,623	+		Pf1N1B4_1726	0.13	-0.1
1,972,624	-		Pf1N1B4_1726	0.13	-3.5
1,972,797	-		Pf1N1B4_1726	0.34	-0.1
1,972,856	+		Pf1N1B4_1726	0.41	-0.1
1,972,870	+		Pf1N1B4_1726	0.43	-0.1
1,972,871	-		Pf1N1B4_1726	0.43	-0.1
1,972,871	-				-0.1
1,972,871	-		Pf1N1B4_1726	0.43	-2.7
1,972,874	+		Pf1N1B4_1726	0.43	-0.1
1,972,874	+		Pf1N1B4_1726	0.43	-0.1
1,972,875	-		Pf1N1B4_1726	0.43	-0.1
1,972,878	-		Pf1N1B4_1726	0.44	-0.1
1,972,878	-		Pf1N1B4_1726	0.44	-0.1
1,972,892	+		Pf1N1B4_1726	0.45	-0.1
1,972,892	+		Pf1N1B4_1726	0.45	-0.1
1,972,929	+		Pf1N1B4_1726	0.50	-0.1
1,972,929	+		Pf1N1B4_1726	0.50	-0.1
1,972,986	+		Pf1N1B4_1726	0.57	-0.1
1,972,986	+		Pf1N1B4_1726	0.57	-2.9
1,972,987	-		Pf1N1B4_1726	0.57	-3.6
1,973,079	+		Pf1N1B4_1726	0.68	-3.4
1,973,136	+		Pf1N1B4_1726	0.75	-3.5
1,973,137	-		Pf1N1B4_1726	0.75	-0.1
1,973,137	-		Pf1N1B4_1726	0.75	-0.1
1,973,216	-		Pf1N1B4_1726	0.85	-1.8
1,973,274	+				-0.1
1,973,274	+				-0.1
1,973,274	+				-3.1
1,973,275	-				-0.1
1,973,275	-				-0.1
1,973,275	-				-2.6
1,973,275	-				-0.1
1,973,275	-				-0.1
1,973,275	-				-0.1
1,973,275	-				-4.1
1,973,286	+				-0.1
1,973,326	+				-0.1
1,973,327	-				-0.1
1,973,327	-				-0.1
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,338	+				-3.3
1,973,338	+				-3.5
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,338	+				-2.6
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,338	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-2.5
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-2.5
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-0.1
1,973,410	+				-2.1
1,973,410	+				-0.1
1,973,411	-				-1.7
1,973,411	-				-0.1
1,973,411	-				-0.1
1,973,411	-				-2.2
1,973,411	-				-0.1
1,973,411	-				-5.0
1,973,411	-				-0.1
1,973,411	-				-0.1
1,973,418	-				-0.1