Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1535

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
1,770,173	+		Pf1N1B4_1534	0.79	-0.0
1,770,173	+		Pf1N1B4_1534	0.79	-0.0
1,770,174	-		Pf1N1B4_1534	0.79	-0.0
1,770,174	-		Pf1N1B4_1534	0.79	-0.0
1,770,174	-		Pf1N1B4_1534	0.79	-3.7
1,770,179	+		Pf1N1B4_1534	0.79	-0.0
1,770,179	+		Pf1N1B4_1534	0.79	-3.1
1,770,179	+		Pf1N1B4_1534	0.79	-0.0
1,770,179	+		Pf1N1B4_1534	0.79	-3.8
1,770,180	-		Pf1N1B4_1534	0.79	-2.8
1,770,244	+		Pf1N1B4_1534	0.81	-3.9
1,770,245	-				-4.1
1,770,319	+		Pf1N1B4_1534	0.82	-2.4
1,770,319	+		Pf1N1B4_1534	0.82	-4.0
1,770,319	+		Pf1N1B4_1534	0.82	-0.0
1,770,320	-		Pf1N1B4_1534	0.82	-4.1
1,770,548	+		Pf1N1B4_1534	0.88	-3.0
1,770,585	+		Pf1N1B4_1534	0.89	-0.0
1,770,585	+		Pf1N1B4_1534	0.89	-2.9
1,770,586	-		Pf1N1B4_1534	0.89	-3.1
1,770,587	+		Pf1N1B4_1534	0.89	-4.3
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,587	+		Pf1N1B4_1534	0.89	-4.4
1,770,587	+		Pf1N1B4_1534	0.89	-3.3
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,587	+		Pf1N1B4_1534	0.89	-3.3
1,770,587	+		Pf1N1B4_1534	0.89	-0.0
1,770,588	-		Pf1N1B4_1534	0.89	-0.0
1,770,588	-		Pf1N1B4_1534	0.89	-0.0
1,770,588	-		Pf1N1B4_1534	0.89	-2.7
1,770,588	-		Pf1N1B4_1534	0.89	-4.3
1,770,588	-		Pf1N1B4_1534	0.89	-0.0
1,770,588	-		Pf1N1B4_1534	0.89	-3.5
1,770,588	-				+1.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-3.7
1,770,620	+		Pf1N1B4_1534	0.89	-3.4
1,770,620	+		Pf1N1B4_1534	0.89	-4.3
1,770,620	+		Pf1N1B4_1534	0.89	-3.3
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,620	+		Pf1N1B4_1534	0.89	-0.0
1,770,621	-		Pf1N1B4_1534	0.89	-0.0
1,770,621	-		Pf1N1B4_1534	0.89	-0.0
1,770,621	-		Pf1N1B4_1534	0.89	-5.3
1,770,621	-		Pf1N1B4_1534	0.89	-0.0
1,770,899	+				-0.0
1,770,899	+				-2.5
1,770,900	-				-0.0
1,770,952	+				-3.5
1,770,952	+				-2.8
1,770,952	+				-0.0
1,770,952	+				-4.2
1,770,952	+				-2.5
1,770,952	+				-3.0
1,770,952	+				-4.7
1,770,952	+				-0.0
1,770,952	+				-3.8
1,770,953	-				-0.0
1,770,953	-				-2.8
1,770,953	-				-3.5
1,770,953	-				-1.6
1,770,953	-				-0.0
1,770,953	-				-0.0
1,771,065	+				-0.0
1,771,066	-				-0.0
1,771,086	+				-0.0
1,771,113	+		Pf1N1B4_1535	0.20	-3.3
1,771,113	+		Pf1N1B4_1535	0.20	-0.0
1,771,266	+		Pf1N1B4_1535	0.87	-0.0
1,771,266	+		Pf1N1B4_1535	0.87	+0.7
1,771,266	+		Pf1N1B4_1535	0.87	-0.0
1,771,266	+		Pf1N1B4_1535	0.87	-0.0
1,771,266	+		Pf1N1B4_1535	0.87	-3.8
1,771,266	+		Pf1N1B4_1535	0.87	-0.0
1,771,266	+		Pf1N1B4_1535	0.87	-0.0
1,771,267	-		Pf1N1B4_1535	0.87	-2.4
1,771,267	-		Pf1N1B4_1535	0.87	-1.5
1,771,372	+				-1.7
1,771,560	+				-0.0
1,771,631	+				-0.0
1,771,631	+				-0.0
1,771,631	+				-0.0
1,771,632	-				-0.0
1,771,632	-				-0.0
1,771,632	-				-0.9
1,771,632	-				-0.0
1,771,632	-				-0.0
1,771,643	+				-0.0
1,771,643	+				-0.0
1,771,643	+				-0.4
1,771,643	+				-0.0
1,771,644	-				-0.0
1,771,644	-				-1.0
1,771,644	-				-0.0
1,771,654	-				-1.3
1,771,664	-		Pf1N1B4_1536	0.10	-0.0
1,771,664	-		Pf1N1B4_1536	0.10	-0.0
1,771,664	-		Pf1N1B4_1536	0.10	-0.0
1,771,676	+		Pf1N1B4_1536	0.11	-2.0
1,771,754	+		Pf1N1B4_1536	0.16	-0.0
1,771,754	+				-0.0
1,771,754	+		Pf1N1B4_1536	0.16	-1.5
1,771,754	+		Pf1N1B4_1536	0.16	-2.8
1,771,754	+		Pf1N1B4_1536	0.16	-2.1
1,771,754	+		Pf1N1B4_1536	0.16	-0.0
1,771,754	+		Pf1N1B4_1536	0.16	-1.6
1,771,754	+		Pf1N1B4_1536	0.16	-1.5
1,771,754	+		Pf1N1B4_1536	0.16	-1.7
1,771,754	+		Pf1N1B4_1536	0.16	-0.0
1,771,754	+		Pf1N1B4_1536	0.16	-0.0
1,771,754	+		Pf1N1B4_1536	0.16	-0.9
1,771,754	+		Pf1N1B4_1536	0.16	-1.1
1,771,754	+		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-1.3
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-1.3
1,771,755	-		Pf1N1B4_1536	0.16	-2.8
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,755	-		Pf1N1B4_1536	0.16	-1.1
1,771,755	-		Pf1N1B4_1536	0.16	-1.4
1,771,755	-		Pf1N1B4_1536	0.16	-0.0
1,771,759	-		Pf1N1B4_1536	0.16	-0.0
1,771,779	-		Pf1N1B4_1536	0.17	-0.0
1,772,007	+		Pf1N1B4_1536	0.32	-0.0
1,772,007	+				-0.0
1,772,007	+		Pf1N1B4_1536	0.32	-1.0