Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1411

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1410 and Pf1N1B4_1411 are separated by 96 nucleotidesPf1N1B4_1411 and Pf1N1B4_1412 are separated by 12 nucleotidesPf1N1B4_1412 and Pf1N1B4_1413 are separated by 94 nucleotides Pf1N1B4_1410 - HflK protein, at 1,618,117 to 1,619,289 _1410 Pf1N1B4_1411 - GTP-binding protein HflX, at 1,619,386 to 1,620,687 _1411 Pf1N1B4_1412 - RNA-binding protein Hfq, at 1,620,700 to 1,620,960 _1412 Pf1N1B4_1413 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 1,621,055 to 1,622,026 _1413 Position (kb) 1619 1620 1621Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1618.896 kb on - strand, within Pf1N1B4_1410at 1619.344 kb on - strandat 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.739 kb on - strand, within Pf1N1B4_1411at 1619.741 kb on - strand, within Pf1N1B4_1411at 1619.741 kb on - strand, within Pf1N1B4_1411at 1619.995 kb on - strand, within Pf1N1B4_1411at 1620.072 kb on - strand, within Pf1N1B4_1411at 1620.072 kb on - strand, within Pf1N1B4_1411at 1620.415 kb on - strand, within Pf1N1B4_1411at 1620.987 kb on - strandat 1620.996 kb on - strandat 1620.996 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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1,618,896 - Pf1N1B4_1410 0.66 -1.6
1,619,344 - -0.0
1,619,739 - Pf1N1B4_1411 0.27 -0.0
1,619,739 - Pf1N1B4_1411 0.27 -6.3
1,619,739 - Pf1N1B4_1411 0.27 -0.0
1,619,739 - Pf1N1B4_1411 0.27 -3.6
1,619,739 - Pf1N1B4_1411 0.27 -2.9
1,619,739 - Pf1N1B4_1411 0.27 -0.0
1,619,741 - Pf1N1B4_1411 0.27 -0.0
1,619,741 - Pf1N1B4_1411 0.27 -0.0
1,619,995 - Pf1N1B4_1411 0.47 -0.0
1,620,072 - Pf1N1B4_1411 0.53 -2.4
1,620,072 - Pf1N1B4_1411 0.53 +1.0
1,620,415 - Pf1N1B4_1411 0.79 -2.0
1,620,987 - -0.0
1,620,996 - -0.0
1,620,996 - -3.1

Or see this region's nucleotide sequence