Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1211

Experiment: Nitrate reduction, replicate A t1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A t1
1,372,759	+				-0.0
1,372,759	+				-0.0
1,372,759	+				-0.0
1,372,759	+				-0.0
1,372,759	+				-0.0
1,372,759	+				-1.2
1,372,760	-				-1.7
1,372,778	+				-0.0
1,372,779	-				-0.0
1,372,998	+		Pf1N1B4_1210	0.35	-1.8
1,372,998	+		Pf1N1B4_1210	0.35	-0.0
1,372,999	-		Pf1N1B4_1210	0.36	-0.0
1,372,999	-		Pf1N1B4_1210	0.36	-1.7
1,372,999	-		Pf1N1B4_1210	0.36	-1.0
1,373,133	+		Pf1N1B4_1210	0.53	-1.3
1,373,133	+		Pf1N1B4_1210	0.53	+1.6
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-				-1.4
1,373,134	-		Pf1N1B4_1210	0.53	-0.0
1,373,134	-		Pf1N1B4_1210	0.53	-1.3
1,373,135	+		Pf1N1B4_1210	0.53	-1.1
1,373,136	-		Pf1N1B4_1210	0.53	-1.9
1,373,441	+				-0.0
1,373,469	+				-1.2
1,373,470	-				-0.0
1,373,485	+				-1.8
1,373,486	-				-0.0
1,373,486	-				-0.0
1,373,498	-				-1.6
1,373,534	+				-0.0
1,373,534	+				-0.0
1,373,534	+				-0.0
1,373,535	-				-0.0
1,373,536	+				-0.0
1,373,536	+				-1.8
1,373,536	+				-1.5
1,373,756	+				-2.2
1,373,757	-				-0.0
1,373,757	-				-2.2
1,374,026	-		Pf1N1B4_1211	0.32	-2.5
1,374,026	-		Pf1N1B4_1211	0.32	-2.3
1,374,045	-		Pf1N1B4_1211	0.34	-3.5
1,374,045	-		Pf1N1B4_1211	0.34	-0.0
1,374,273	+		Pf1N1B4_1211	0.59	-0.0
1,374,273	+		Pf1N1B4_1211	0.59	-0.0
1,374,302	+		Pf1N1B4_1211	0.62	-2.6
1,374,302	+		Pf1N1B4_1211	0.62	-0.0
1,374,303	-				-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-1.8
1,374,303	-		Pf1N1B4_1211	0.62	-2.7
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,303	-				-0.0
1,374,303	-		Pf1N1B4_1211	0.62	-0.0
1,374,338	+		Pf1N1B4_1211	0.66	-0.0
1,374,338	+		Pf1N1B4_1211	0.66	-0.0
1,374,651	+				-0.0
1,374,651	+				-0.0
1,374,651	+				-0.0
1,374,652	-				-1.5
1,374,652	-				-0.0
1,374,652	-				-0.0
1,374,652	-				-0.0
1,374,724	+				-1.4
1,374,724	+				-0.0
1,374,725	-				-0.0
1,374,731	-				-0.0
1,374,737	+				-0.0
1,374,737	+				-0.0
1,374,738	-				-0.0
1,374,760	-				-1.5
1,374,760	-				-0.0
1,374,760	-				-0.0
1,374,760	-				-0.0
1,374,760	-				-0.0
1,374,763	+				-0.0
1,374,763	+				-0.0
1,374,763	+				-1.7
1,374,763	+				-0.0
1,374,764	-				-1.5
1,374,764	-				-0.0
1,374,764	-				-2.7
1,374,764	-				-2.3
1,374,766	+				-0.0
1,374,767	-				-0.0
1,374,768	+				-0.0
1,374,847	+				-0.0
1,374,852	+				-1.4
1,374,852	+				-0.0
1,374,852	+				-2.5
1,374,852	+				-0.0
1,374,852	+				-1.1
1,374,853	-				-2.3
1,374,853	-				-0.0
1,374,853	-				-1.0
1,374,853	-				-0.0
1,374,853	-				-0.0
1,374,853	-				-1.2
1,374,853	-				-1.8
1,374,853	-				-0.0
1,374,853	-				-2.0
1,374,872	+				-0.0
1,374,872	+				-2.2
1,374,873	-				-2.0
1,374,873	-				-0.0
1,374,897	-				-2.3
1,375,320	+		Pf1N1B4_1212	0.80	-1.0
1,375,321	-		Pf1N1B4_1212	0.81	-0.0
1,375,335	+		Pf1N1B4_1212	0.85	-3.1
1,375,335	+		Pf1N1B4_1212	0.85	-1.9
1,375,335	+		Pf1N1B4_1212	0.85	-0.0
1,375,335	+		Pf1N1B4_1212	0.85	-0.0
1,375,335	+		Pf1N1B4_1212	0.85	-0.0
1,375,335	+		Pf1N1B4_1212	0.85	-2.4
1,375,336	-		Pf1N1B4_1212	0.85	-0.0
1,375,336	-		Pf1N1B4_1212	0.85	-0.0
1,375,469	-				-2.1
1,375,494	-		Pf1N1B4_1213	0.11	-0.0
1,375,494	-		Pf1N1B4_1213	0.11	-0.0
1,375,495	+		Pf1N1B4_1213	0.11	-0.0
1,375,496	-		Pf1N1B4_1213	0.12	-0.0
1,375,496	-		Pf1N1B4_1213	0.12	-1.7
1,375,502	+		Pf1N1B4_1213	0.14	-1.5
1,375,502	+		Pf1N1B4_1213	0.14	-0.0
1,375,503	-		Pf1N1B4_1213	0.14	-0.0
1,375,503	-		Pf1N1B4_1213	0.14	-0.0
1,375,503	-		Pf1N1B4_1213	0.14	-0.0
1,375,503	-		Pf1N1B4_1213	0.14	-0.0
1,375,503	-		Pf1N1B4_1213	0.14	-0.5
1,375,514	+		Pf1N1B4_1213	0.18	-1.4
1,375,515	-		Pf1N1B4_1213	0.18	-0.0
1,375,515	-		Pf1N1B4_1213	0.18	-0.0
1,375,515	-		Pf1N1B4_1213	0.18	-0.0
1,375,515	-		Pf1N1B4_1213	0.18	-1.6
1,375,547	+		Pf1N1B4_1213	0.30	-1.5