Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1147

Experiment: Nitrate reduction, replicate A t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1146 and Pf1N1B4_1147 are separated by 301 nucleotidesPf1N1B4_1147 and Pf1N1B4_1148 are separated by 3 nucleotidesPf1N1B4_1148 and Pf1N1B4_1149 are separated by 117 nucleotides Pf1N1B4_1146 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data), at 1,289,473 to 1,292,334 _1146 Pf1N1B4_1147 - Fructose repressor FruR, LacI family, at 1,292,636 to 1,293,631 _1147 Pf1N1B4_1148 - Putative deoxyribonuclease YjjV, at 1,293,635 to 1,294,411 _1148 Pf1N1B4_1149 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 1,294,529 to 1,296,559 _1149 Position (kb) 1292 1293 1294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1292.054 kb on + strandat 1292.055 kb on - strandat 1292.163 kb on + strandat 1292.163 kb on + strandat 1292.164 kb on - strandat 1292.164 kb on - strandat 1292.164 kb on - strandat 1292.164 kb on - strandat 1292.164 kb on - strandat 1292.219 kb on + strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.220 kb on - strandat 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.264 kb on - strandat 1292.264 kb on - strandat 1292.264 kb on - strandat 1292.317 kb on + strandat 1292.317 kb on + strandat 1292.318 kb on - strandat 1292.318 kb on - strandat 1292.368 kb on + strandat 1292.368 kb on + strandat 1292.368 kb on + strandat 1292.368 kb on + strandat 1292.369 kb on - strandat 1292.391 kb on - strandat 1292.391 kb on - strandat 1292.391 kb on - strandat 1292.473 kb on + strandat 1292.617 kb on + strandat 1292.618 kb on - strandat 1292.630 kb on - strandat 1292.651 kb on - strandat 1292.651 kb on - strandat 1292.651 kb on - strandat 1292.690 kb on + strandat 1292.690 kb on + strandat 1292.690 kb on + strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.691 kb on - strandat 1292.722 kb on + strandat 1292.722 kb on + strandat 1292.722 kb on + strandat 1292.723 kb on - strandat 1292.723 kb on - strandat 1292.723 kb on - strandat 1292.861 kb on + strand, within Pf1N1B4_1147at 1292.862 kb on - strand, within Pf1N1B4_1147at 1292.924 kb on - strand, within Pf1N1B4_1147at 1292.961 kb on + strandat 1292.961 kb on + strand, within Pf1N1B4_1147at 1292.961 kb on + strand, within Pf1N1B4_1147at 1292.961 kb on + strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1292.962 kb on - strand, within Pf1N1B4_1147at 1293.035 kb on + strandat 1293.035 kb on + strand, within Pf1N1B4_1147at 1293.146 kb on - strand, within Pf1N1B4_1147at 1293.211 kb on + strand, within Pf1N1B4_1147at 1293.211 kb on + strand, within Pf1N1B4_1147at 1293.212 kb on - strand, within Pf1N1B4_1147at 1293.377 kb on + strand, within Pf1N1B4_1147at 1293.377 kb on + strand, within Pf1N1B4_1147at 1293.377 kb on + strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.378 kb on - strand, within Pf1N1B4_1147at 1293.460 kb on + strand, within Pf1N1B4_1147at 1293.833 kb on + strand, within Pf1N1B4_1148at 1293.833 kb on + strand, within Pf1N1B4_1148at 1293.834 kb on - strand, within Pf1N1B4_1148at 1293.834 kb on - strand, within Pf1N1B4_1148at 1293.834 kb on - strandat 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.909 kb on + strand, within Pf1N1B4_1148at 1293.910 kb on - strand, within Pf1N1B4_1148at 1293.910 kb on - strand, within Pf1N1B4_1148at 1293.910 kb on - strand, within Pf1N1B4_1148at 1293.938 kb on + strand, within Pf1N1B4_1148at 1293.938 kb on + strand, within Pf1N1B4_1148at 1293.938 kb on + strand, within Pf1N1B4_1148at 1293.939 kb on - strand, within Pf1N1B4_1148at 1293.939 kb on - strand, within Pf1N1B4_1148at 1293.939 kb on - strand, within Pf1N1B4_1148at 1294.139 kb on + strand, within Pf1N1B4_1148at 1294.139 kb on + strand, within Pf1N1B4_1148at 1294.139 kb on + strand, within Pf1N1B4_1148at 1294.139 kb on + strand, within Pf1N1B4_1148at 1294.140 kb on - strand, within Pf1N1B4_1148at 1294.140 kb on - strandat 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.294 kb on + strand, within Pf1N1B4_1148at 1294.295 kb on - strand, within Pf1N1B4_1148at 1294.295 kb on - strand, within Pf1N1B4_1148at 1294.295 kb on - strand, within Pf1N1B4_1148at 1294.295 kb on - strand, within Pf1N1B4_1148at 1294.295 kb on - strand, within Pf1N1B4_1148at 1294.297 kb on + strand, within Pf1N1B4_1148at 1294.410 kb on - strandat 1294.418 kb on - strandat 1294.418 kb on - strandat 1294.466 kb on + strandat 1294.466 kb on + strandat 1294.467 kb on - strandat 1294.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1
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1,292,054 + -1.7
1,292,055 - -1.9
1,292,163 + -0.0
1,292,163 + -0.0
1,292,164 - -1.7
1,292,164 - -2.6
1,292,164 - -0.0
1,292,164 - -0.0
1,292,164 - -0.0
1,292,219 + -1.2
1,292,220 - -0.0
1,292,220 - -0.0
1,292,220 - -0.0
1,292,220 - -0.0
1,292,220 - -0.0
1,292,220 - -0.0
1,292,220 - -2.5
1,292,263 + -0.0
1,292,263 + -1.5
1,292,263 + -0.0
1,292,264 - -0.0
1,292,264 - -0.0
1,292,264 - -1.1
1,292,317 + -0.0
1,292,317 + -1.9
1,292,318 - -0.0
1,292,318 - -1.4
1,292,368 + -2.3
1,292,368 + -1.9
1,292,368 + -0.0
1,292,368 + -0.0
1,292,369 - -3.4
1,292,391 - -0.0
1,292,391 - -3.4
1,292,391 - -0.0
1,292,473 + -2.1
1,292,617 + -0.0
1,292,618 - -2.3
1,292,630 - -2.0
1,292,651 - -0.0
1,292,651 - -2.2
1,292,651 - -2.2
1,292,690 + -0.0
1,292,690 + -0.0
1,292,690 + -0.0
1,292,691 - -0.0
1,292,691 - -0.0
1,292,691 - -2.5
1,292,691 - -0.0
1,292,691 - -0.0
1,292,691 - -2.6
1,292,691 - -3.1
1,292,691 - -0.0
1,292,691 - -2.3
1,292,691 - -1.8
1,292,691 - -3.6
1,292,691 - -3.0
1,292,691 - -1.9
1,292,722 + -1.7
1,292,722 + -0.0
1,292,722 + -0.0
1,292,723 - -3.0
1,292,723 - -1.6
1,292,723 - -0.0
1,292,861 + Pf1N1B4_1147 0.23 -1.9
1,292,862 - Pf1N1B4_1147 0.23 -2.2
1,292,924 - Pf1N1B4_1147 0.29 -2.7
1,292,961 + -3.5
1,292,961 + Pf1N1B4_1147 0.33 -2.0
1,292,961 + Pf1N1B4_1147 0.33 -0.0
1,292,961 + Pf1N1B4_1147 0.33 -0.0
1,292,962 - Pf1N1B4_1147 0.33 -2.2
1,292,962 - Pf1N1B4_1147 0.33 -1.9
1,292,962 - Pf1N1B4_1147 0.33 -2.4
1,292,962 - Pf1N1B4_1147 0.33 -0.0
1,292,962 - Pf1N1B4_1147 0.33 -0.0
1,292,962 - Pf1N1B4_1147 0.33 -0.0
1,293,035 + -0.0
1,293,035 + Pf1N1B4_1147 0.40 -2.0
1,293,146 - Pf1N1B4_1147 0.51 -3.1
1,293,211 + Pf1N1B4_1147 0.58 -2.5
1,293,211 + Pf1N1B4_1147 0.58 -0.0
1,293,212 - Pf1N1B4_1147 0.58 -0.0
1,293,377 + Pf1N1B4_1147 0.74 -0.0
1,293,377 + Pf1N1B4_1147 0.74 -2.9
1,293,377 + Pf1N1B4_1147 0.74 -3.2
1,293,378 - Pf1N1B4_1147 0.74 -1.6
1,293,378 - Pf1N1B4_1147 0.74 -4.0
1,293,378 - Pf1N1B4_1147 0.74 -0.0
1,293,378 - Pf1N1B4_1147 0.74 -2.4
1,293,378 - Pf1N1B4_1147 0.74 -3.1
1,293,378 - Pf1N1B4_1147 0.74 -0.0
1,293,378 - Pf1N1B4_1147 0.74 -0.0
1,293,460 + Pf1N1B4_1147 0.83 -3.9
1,293,833 + Pf1N1B4_1148 0.25 -0.0
1,293,833 + Pf1N1B4_1148 0.25 -1.7
1,293,834 - Pf1N1B4_1148 0.26 -2.1
1,293,834 - Pf1N1B4_1148 0.26 -0.0
1,293,834 - -2.0
1,293,909 + Pf1N1B4_1148 0.35 -1.8
1,293,909 + Pf1N1B4_1148 0.35 -0.0
1,293,909 + Pf1N1B4_1148 0.35 -0.0
1,293,909 + Pf1N1B4_1148 0.35 -2.2
1,293,909 + Pf1N1B4_1148 0.35 -4.4
1,293,909 + Pf1N1B4_1148 0.35 -1.3
1,293,910 - Pf1N1B4_1148 0.35 -1.8
1,293,910 - Pf1N1B4_1148 0.35 -0.0
1,293,910 - Pf1N1B4_1148 0.35 -0.0
1,293,938 + Pf1N1B4_1148 0.39 -0.0
1,293,938 + Pf1N1B4_1148 0.39 -0.0
1,293,938 + Pf1N1B4_1148 0.39 -1.6
1,293,939 - Pf1N1B4_1148 0.39 -0.0
1,293,939 - Pf1N1B4_1148 0.39 -0.0
1,293,939 - Pf1N1B4_1148 0.39 -0.0
1,294,139 + Pf1N1B4_1148 0.65 -0.0
1,294,139 + Pf1N1B4_1148 0.65 -0.0
1,294,139 + Pf1N1B4_1148 0.65 -0.0
1,294,139 + Pf1N1B4_1148 0.65 -1.8
1,294,140 - Pf1N1B4_1148 0.65 -0.0
1,294,140 - -0.0
1,294,294 + Pf1N1B4_1148 0.85 -1.0
1,294,294 + Pf1N1B4_1148 0.85 -1.3
1,294,294 + Pf1N1B4_1148 0.85 -0.2
1,294,294 + Pf1N1B4_1148 0.85 -1.7
1,294,294 + Pf1N1B4_1148 0.85 -1.2
1,294,294 + Pf1N1B4_1148 0.85 -1.3
1,294,295 - Pf1N1B4_1148 0.85 -0.0
1,294,295 - Pf1N1B4_1148 0.85 -1.5
1,294,295 - Pf1N1B4_1148 0.85 -1.3
1,294,295 - Pf1N1B4_1148 0.85 -1.4
1,294,295 - Pf1N1B4_1148 0.85 -0.0
1,294,297 + Pf1N1B4_1148 0.85 -0.0
1,294,410 - -1.3
1,294,418 - -0.0
1,294,418 - -0.0
1,294,466 + -2.3
1,294,466 + -0.0
1,294,467 - -0.0
1,294,467 - -1.8

Or see this region's nucleotide sequence