Experiment: Nitrate reduction, replicate A t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1134 and Pf1N1B4_1135 are separated by 179 nucleotides Pf1N1B4_1135 and Pf1N1B4_1136 are separated by 134 nucleotides
Pf1N1B4_1134 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 1,271,818 to 1,272,975
_1134
Pf1N1B4_1135 - FIG00960055: hypothetical protein, at 1,273,155 to 1,273,307
_1135
Pf1N1B4_1136 - Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19), at 1,273,442 to 1,274,605
_1136
Position (kb)
1273
1274 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1272.211 kb on + strand, within Pf1N1B4_1134 at 1272.556 kb on - strand, within Pf1N1B4_1134 at 1272.667 kb on + strand, within Pf1N1B4_1134 at 1272.706 kb on + strand, within Pf1N1B4_1134 at 1272.754 kb on + strand, within Pf1N1B4_1134 at 1272.755 kb on - strand, within Pf1N1B4_1134 at 1272.755 kb on - strand, within Pf1N1B4_1134 at 1272.784 kb on + strand, within Pf1N1B4_1134 at 1272.784 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.797 kb on + strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.798 kb on - strand, within Pf1N1B4_1134 at 1272.801 kb on + strand, within Pf1N1B4_1134 at 1272.801 kb on + strand, within Pf1N1B4_1134 at 1272.801 kb on + strand, within Pf1N1B4_1134 at 1272.801 kb on + strand, within Pf1N1B4_1134 at 1272.801 kb on + strand, within Pf1N1B4_1134 at 1272.802 kb on - strand, within Pf1N1B4_1134 at 1272.820 kb on + strand, within Pf1N1B4_1134 at 1272.820 kb on + strand, within Pf1N1B4_1134 at 1272.820 kb on + strand, within Pf1N1B4_1134 at 1272.820 kb on + strand, within Pf1N1B4_1134 at 1272.821 kb on - strand, within Pf1N1B4_1134 at 1272.821 kb on - strand, within Pf1N1B4_1134 at 1272.904 kb on + strand at 1273.021 kb on - strand at 1273.021 kb on - strand at 1273.036 kb on - strand at 1273.111 kb on - strand at 1273.120 kb on - strand at 1273.151 kb on + strand at 1273.152 kb on - strand at 1273.152 kb on - strand at 1273.152 kb on - strand at 1273.152 kb on - strand at 1273.152 kb on - strand at 1273.152 kb on - strand at 1273.159 kb on + strand at 1273.159 kb on + strand at 1273.159 kb on + strand at 1273.159 kb on + strand at 1273.160 kb on - strand at 1273.160 kb on - strand at 1273.160 kb on - strand at 1273.283 kb on - strand, within Pf1N1B4_1135 at 1273.283 kb on - strand, within Pf1N1B4_1135 at 1273.283 kb on - strand, within Pf1N1B4_1135 at 1273.283 kb on - strand, within Pf1N1B4_1135 at 1273.283 kb on - strand, within Pf1N1B4_1135 at 1273.362 kb on + strand at 1273.362 kb on + strand at 1273.412 kb on - strand at 1273.464 kb on - strand at 1273.599 kb on - strand, within Pf1N1B4_1136 at 1273.599 kb on - strand, within Pf1N1B4_1136 at 1273.599 kb on - strand, within Pf1N1B4_1136 at 1273.599 kb on - strand, within Pf1N1B4_1136 at 1273.601 kb on + strand, within Pf1N1B4_1136 at 1273.602 kb on - strand, within Pf1N1B4_1136 at 1273.682 kb on + strand, within Pf1N1B4_1136 at 1273.683 kb on - strand, within Pf1N1B4_1136 at 1273.770 kb on - strand, within Pf1N1B4_1136 at 1273.776 kb on - strand, within Pf1N1B4_1136 at 1273.796 kb on + strand, within Pf1N1B4_1136 at 1273.796 kb on + strand, within Pf1N1B4_1136 at 1273.797 kb on - strand, within Pf1N1B4_1136 at 1273.859 kb on + strand, within Pf1N1B4_1136 at 1273.860 kb on - strand at 1274.135 kb on + strand at 1274.135 kb on + strand, within Pf1N1B4_1136 at 1274.135 kb on + strand, within Pf1N1B4_1136 at 1274.135 kb on + strand, within Pf1N1B4_1136 at 1274.135 kb on + strand, within Pf1N1B4_1136 at 1274.135 kb on + strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.136 kb on - strand, within Pf1N1B4_1136 at 1274.165 kb on + strand, within Pf1N1B4_1136 at 1274.166 kb on - strand, within Pf1N1B4_1136 at 1274.280 kb on + strand, within Pf1N1B4_1136 at 1274.280 kb on + strand, within Pf1N1B4_1136 at 1274.281 kb on - strand, within Pf1N1B4_1136
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A t1 remove 1,272,211 + Pf1N1B4_1134 0.34 -0.0 1,272,556 - Pf1N1B4_1134 0.64 -1.6 1,272,667 + Pf1N1B4_1134 0.73 -0.0 1,272,706 + Pf1N1B4_1134 0.77 -1.1 1,272,754 + Pf1N1B4_1134 0.81 -1.0 1,272,755 - Pf1N1B4_1134 0.81 -1.1 1,272,755 - Pf1N1B4_1134 0.81 -2.4 1,272,784 + Pf1N1B4_1134 0.83 -0.0 1,272,784 + Pf1N1B4_1134 0.83 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -1.7 1,272,797 + Pf1N1B4_1134 0.85 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -2.0 1,272,797 + Pf1N1B4_1134 0.85 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -1.0 1,272,797 + Pf1N1B4_1134 0.85 -1.7 1,272,797 + Pf1N1B4_1134 0.85 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -0.0 1,272,797 + Pf1N1B4_1134 0.85 -0.8 1,272,797 + Pf1N1B4_1134 0.85 -1.6 1,272,798 - Pf1N1B4_1134 0.85 -0.0 1,272,798 - Pf1N1B4_1134 0.85 -1.2 1,272,798 - Pf1N1B4_1134 0.85 -0.0 1,272,798 - Pf1N1B4_1134 0.85 -0.0 1,272,798 - Pf1N1B4_1134 0.85 -2.1 1,272,798 - Pf1N1B4_1134 0.85 -0.0 1,272,798 - Pf1N1B4_1134 0.85 -0.0 1,272,801 + Pf1N1B4_1134 0.85 -0.0 1,272,801 + Pf1N1B4_1134 0.85 -0.0 1,272,801 + Pf1N1B4_1134 0.85 -0.0 1,272,801 + Pf1N1B4_1134 0.85 -0.0 1,272,801 + Pf1N1B4_1134 0.85 -0.0 1,272,802 - Pf1N1B4_1134 0.85 -0.0 1,272,820 + Pf1N1B4_1134 0.87 -0.0 1,272,820 + Pf1N1B4_1134 0.87 -0.0 1,272,820 + Pf1N1B4_1134 0.87 -1.7 1,272,820 + Pf1N1B4_1134 0.87 -0.0 1,272,821 - Pf1N1B4_1134 0.87 -0.0 1,272,821 - Pf1N1B4_1134 0.87 -3.4 1,272,904 + -0.0 1,273,021 - -1.5 1,273,021 - -1.2 1,273,036 - -3.9 1,273,111 - -0.0 1,273,120 - -0.0 1,273,151 + -0.0 1,273,152 - -2.1 1,273,152 - -1.2 1,273,152 - -1.3 1,273,152 - -0.0 1,273,152 - -0.0 1,273,152 - -1.1 1,273,159 + -4.6 1,273,159 + -0.0 1,273,159 + -2.2 1,273,159 + -2.1 1,273,160 - -0.0 1,273,160 - -0.0 1,273,160 - -0.0 1,273,283 - Pf1N1B4_1135 0.84 -2.2 1,273,283 - Pf1N1B4_1135 0.84 -0.0 1,273,283 - Pf1N1B4_1135 0.84 -0.0 1,273,283 - Pf1N1B4_1135 0.84 -3.1 1,273,283 - Pf1N1B4_1135 0.84 -0.0 1,273,362 + -2.9 1,273,362 + -0.0 1,273,412 - -0.0 1,273,464 - -0.0 1,273,599 - Pf1N1B4_1136 0.13 -0.0 1,273,599 - Pf1N1B4_1136 0.13 -0.0 1,273,599 - Pf1N1B4_1136 0.13 -1.2 1,273,599 - Pf1N1B4_1136 0.13 -1.8 1,273,601 + Pf1N1B4_1136 0.14 -0.0 1,273,602 - Pf1N1B4_1136 0.14 -0.0 1,273,682 + Pf1N1B4_1136 0.21 -2.6 1,273,683 - Pf1N1B4_1136 0.21 -0.0 1,273,770 - Pf1N1B4_1136 0.28 -2.4 1,273,776 - Pf1N1B4_1136 0.29 -0.0 1,273,796 + Pf1N1B4_1136 0.30 -2.2 1,273,796 + Pf1N1B4_1136 0.30 -1.4 1,273,797 - Pf1N1B4_1136 0.30 -0.0 1,273,859 + Pf1N1B4_1136 0.36 -0.0 1,273,860 - -0.0 1,274,135 + -2.2 1,274,135 + Pf1N1B4_1136 0.60 -0.0 1,274,135 + Pf1N1B4_1136 0.60 -0.0 1,274,135 + Pf1N1B4_1136 0.60 -1.0 1,274,135 + Pf1N1B4_1136 0.60 -2.0 1,274,135 + Pf1N1B4_1136 0.60 -0.0 1,274,136 - Pf1N1B4_1136 0.60 -0.0 1,274,136 - Pf1N1B4_1136 0.60 -0.0 1,274,136 - Pf1N1B4_1136 0.60 -0.9 1,274,136 - Pf1N1B4_1136 0.60 -0.0 1,274,136 - Pf1N1B4_1136 0.60 -0.5 1,274,136 - Pf1N1B4_1136 0.60 -0.8 1,274,136 - Pf1N1B4_1136 0.60 -2.0 1,274,165 + Pf1N1B4_1136 0.62 -0.0 1,274,166 - Pf1N1B4_1136 0.62 -1.1 1,274,280 + Pf1N1B4_1136 0.72 -1.8 1,274,280 + Pf1N1B4_1136 0.72 -0.5 1,274,281 - Pf1N1B4_1136 0.72 -0.6
Or see this region's nucleotide sequence