Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34480

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34470 and PGA1_c34480 are separated by 97 nucleotidesPGA1_c34480 and PGA1_c34490 are separated by 186 nucleotidesPGA1_c34490 and PGA1_c34500 overlap by 1 nucleotides PGA1_c34470: PGA1_c34470 - UDP-glucose 4-epimerase ExoB, at 3,614,495 to 3,615,478 _c34470 PGA1_c34480: PGA1_c34480 - UTP--glucose-1-phosphate uridylyltransferase CelA, at 3,615,576 to 3,616,469 _c34480 PGA1_c34490: PGA1_c34490 - 3-deoxy-manno-octulosonate cytidylyltransferase KdsB, at 3,616,656 to 3,617,456 _c34490 PGA1_c34500: PGA1_c34500 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,617,456 to 3,618,253 _c34500 Position (kb) 3615 3616 3617Strain fitness (log2 ratio) -2 -1 0 1at 3614.682 kb on + strand, within PGA1_c34470at 3614.719 kb on - strand, within PGA1_c34470at 3614.829 kb on - strand, within PGA1_c34470at 3615.079 kb on - strand, within PGA1_c34470at 3615.102 kb on - strand, within PGA1_c34470at 3615.120 kb on - strand, within PGA1_c34470at 3615.130 kb on - strand, within PGA1_c34470at 3615.181 kb on + strand, within PGA1_c34470at 3615.181 kb on + strand, within PGA1_c34470at 3615.230 kb on - strand, within PGA1_c34470at 3615.279 kb on + strand, within PGA1_c34470at 3615.328 kb on - strand, within PGA1_c34470at 3615.334 kb on + strand, within PGA1_c34470at 3615.408 kb on + strandat 3615.448 kb on - strandat 3615.466 kb on + strandat 3615.530 kb on + strandat 3615.573 kb on + strandat 3615.597 kb on - strandat 3615.664 kb on + strandat 3615.686 kb on + strand, within PGA1_c34480at 3615.842 kb on - strand, within PGA1_c34480at 3615.883 kb on + strand, within PGA1_c34480at 3616.008 kb on + strand, within PGA1_c34480at 3616.216 kb on + strand, within PGA1_c34480at 3616.224 kb on - strand, within PGA1_c34480at 3616.373 kb on - strand, within PGA1_c34480at 3616.486 kb on - strandat 3616.500 kb on + strandat 3616.508 kb on - strandat 3616.508 kb on - strandat 3616.508 kb on - strandat 3616.511 kb on + strandat 3616.514 kb on + strandat 3616.574 kb on - strandat 3616.588 kb on + strandat 3616.600 kb on + strandat 3616.604 kb on + strandat 3616.610 kb on + strandat 3616.611 kb on + strandat 3616.612 kb on - strandat 3616.618 kb on - strandat 3616.618 kb on - strandat 3616.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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3,614,682 + PGA1_c34470 0.19 -0.6
3,614,719 - PGA1_c34470 0.23 +0.0
3,614,829 - PGA1_c34470 0.34 +0.5
3,615,079 - PGA1_c34470 0.59 -0.3
3,615,102 - PGA1_c34470 0.62 -1.3
3,615,120 - PGA1_c34470 0.64 -0.3
3,615,130 - PGA1_c34470 0.65 +0.7
3,615,181 + PGA1_c34470 0.70 +0.4
3,615,181 + PGA1_c34470 0.70 -1.5
3,615,230 - PGA1_c34470 0.75 +0.3
3,615,279 + PGA1_c34470 0.80 +0.4
3,615,328 - PGA1_c34470 0.85 +0.4
3,615,334 + PGA1_c34470 0.85 -0.8
3,615,408 + -0.7
3,615,448 - -0.3
3,615,466 + -1.7
3,615,530 + +0.3
3,615,573 + -0.5
3,615,597 - -0.5
3,615,664 + -2.6
3,615,686 + PGA1_c34480 0.12 +0.5
3,615,842 - PGA1_c34480 0.30 +0.6
3,615,883 + PGA1_c34480 0.34 +1.1
3,616,008 + PGA1_c34480 0.48 +0.9
3,616,216 + PGA1_c34480 0.72 +1.4
3,616,224 - PGA1_c34480 0.72 -2.3
3,616,373 - PGA1_c34480 0.89 -0.2
3,616,486 - -0.6
3,616,500 + +0.4
3,616,508 - +0.1
3,616,508 - +0.4
3,616,508 - +0.1
3,616,511 + +0.8
3,616,514 + -0.4
3,616,574 - -0.1
3,616,588 + +1.7
3,616,600 + +0.5
3,616,604 + +0.1
3,616,610 + -0.6
3,616,611 + +0.9
3,616,612 - +0.7
3,616,618 - -0.6
3,616,618 - -1.6
3,616,629 - -0.3

Or see this region's nucleotide sequence