Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34470 and PGA1_c34480 are separated by 97 nucleotides PGA1_c34480 and PGA1_c34490 are separated by 186 nucleotides PGA1_c34490 and PGA1_c34500 overlap by 1 nucleotides
PGA1_c34470: PGA1_c34470 - UDP-glucose 4-epimerase ExoB, at 3,614,495 to 3,615,478
_c34470
PGA1_c34480: PGA1_c34480 - UTP--glucose-1-phosphate uridylyltransferase CelA, at 3,615,576 to 3,616,469
_c34480
PGA1_c34490: PGA1_c34490 - 3-deoxy-manno-octulosonate cytidylyltransferase KdsB, at 3,616,656 to 3,617,456
_c34490
PGA1_c34500: PGA1_c34500 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,617,456 to 3,618,253
_c34500
Position (kb)
3615
3616
3617 Strain fitness (log2 ratio)
-2
-1
0
1 at 3614.682 kb on + strand, within PGA1_c34470 at 3614.719 kb on - strand, within PGA1_c34470 at 3614.829 kb on - strand, within PGA1_c34470 at 3615.079 kb on - strand, within PGA1_c34470 at 3615.102 kb on - strand, within PGA1_c34470 at 3615.120 kb on - strand, within PGA1_c34470 at 3615.130 kb on - strand, within PGA1_c34470 at 3615.181 kb on + strand, within PGA1_c34470 at 3615.181 kb on + strand, within PGA1_c34470 at 3615.230 kb on - strand, within PGA1_c34470 at 3615.279 kb on + strand, within PGA1_c34470 at 3615.328 kb on - strand, within PGA1_c34470 at 3615.334 kb on + strand, within PGA1_c34470 at 3615.408 kb on + strand at 3615.448 kb on - strand at 3615.466 kb on + strand at 3615.530 kb on + strand at 3615.573 kb on + strand at 3615.597 kb on - strand at 3615.664 kb on + strand at 3615.686 kb on + strand, within PGA1_c34480 at 3615.842 kb on - strand, within PGA1_c34480 at 3615.883 kb on + strand, within PGA1_c34480 at 3616.008 kb on + strand, within PGA1_c34480 at 3616.216 kb on + strand, within PGA1_c34480 at 3616.224 kb on - strand, within PGA1_c34480 at 3616.373 kb on - strand, within PGA1_c34480 at 3616.486 kb on - strand at 3616.500 kb on + strand at 3616.508 kb on - strand at 3616.508 kb on - strand at 3616.508 kb on - strand at 3616.511 kb on + strand at 3616.514 kb on + strand at 3616.574 kb on - strand at 3616.588 kb on + strand at 3616.600 kb on + strand at 3616.604 kb on + strand at 3616.610 kb on + strand at 3616.611 kb on + strand at 3616.612 kb on - strand at 3616.618 kb on - strand at 3616.618 kb on - strand at 3616.629 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 3,614,682 + PGA1_c34470 0.19 -0.6 3,614,719 - PGA1_c34470 0.23 +0.0 3,614,829 - PGA1_c34470 0.34 +0.5 3,615,079 - PGA1_c34470 0.59 -0.3 3,615,102 - PGA1_c34470 0.62 -1.3 3,615,120 - PGA1_c34470 0.64 -0.3 3,615,130 - PGA1_c34470 0.65 +0.7 3,615,181 + PGA1_c34470 0.70 +0.4 3,615,181 + PGA1_c34470 0.70 -1.5 3,615,230 - PGA1_c34470 0.75 +0.3 3,615,279 + PGA1_c34470 0.80 +0.4 3,615,328 - PGA1_c34470 0.85 +0.4 3,615,334 + PGA1_c34470 0.85 -0.8 3,615,408 + -0.7 3,615,448 - -0.3 3,615,466 + -1.7 3,615,530 + +0.3 3,615,573 + -0.5 3,615,597 - -0.5 3,615,664 + -2.6 3,615,686 + PGA1_c34480 0.12 +0.5 3,615,842 - PGA1_c34480 0.30 +0.6 3,615,883 + PGA1_c34480 0.34 +1.1 3,616,008 + PGA1_c34480 0.48 +0.9 3,616,216 + PGA1_c34480 0.72 +1.4 3,616,224 - PGA1_c34480 0.72 -2.3 3,616,373 - PGA1_c34480 0.89 -0.2 3,616,486 - -0.6 3,616,500 + +0.4 3,616,508 - +0.1 3,616,508 - +0.4 3,616,508 - +0.1 3,616,511 + +0.8 3,616,514 + -0.4 3,616,574 - -0.1 3,616,588 + +1.7 3,616,600 + +0.5 3,616,604 + +0.1 3,616,610 + -0.6 3,616,611 + +0.9 3,616,612 - +0.7 3,616,618 - -0.6 3,616,618 - -1.6 3,616,629 - -0.3
Or see this region's nucleotide sequence