Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24670 and PGA1_c24680 are separated by 61 nucleotides PGA1_c24680 and PGA1_c24690 overlap by 4 nucleotides PGA1_c24690 and PGA1_c24700 overlap by 8 nucleotides
PGA1_c24670: PGA1_c24670 - thymidine kinase Tdk, at 2,574,465 to 2,575,064
_c24670
PGA1_c24680: PGA1_c24680 - glyoxylate reductase GyaR, at 2,575,126 to 2,576,082
_c24680
PGA1_c24690: PGA1_c24690 - protein CsaA-like protein, at 2,576,079 to 2,576,417
_c24690
PGA1_c24700: PGA1_c24700 - pyrroline-5-carboxylate reductase ProC, at 2,576,410 to 2,577,237
_c24700
Position (kb)
2575
2576
2577 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2574.143 kb on - strand at 2574.167 kb on + strand at 2574.173 kb on + strand at 2574.173 kb on + strand at 2574.173 kb on + strand at 2574.181 kb on - strand at 2574.181 kb on - strand at 2574.181 kb on - strand at 2574.198 kb on + strand at 2574.198 kb on + strand at 2574.199 kb on + strand at 2574.199 kb on - strand at 2574.200 kb on + strand at 2574.200 kb on + strand at 2574.200 kb on + strand at 2574.200 kb on + strand at 2574.200 kb on + strand at 2574.200 kb on - strand at 2574.200 kb on - strand at 2574.206 kb on - strand at 2574.207 kb on - strand at 2574.207 kb on - strand at 2574.207 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.208 kb on - strand at 2574.210 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.211 kb on + strand at 2574.216 kb on + strand at 2574.216 kb on + strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.219 kb on - strand at 2574.221 kb on + strand at 2574.224 kb on - strand at 2574.226 kb on - strand at 2574.235 kb on + strand at 2574.237 kb on + strand at 2574.243 kb on - strand at 2574.245 kb on - strand at 2574.255 kb on + strand at 2574.256 kb on + strand at 2574.328 kb on + strand at 2574.338 kb on + strand at 2574.361 kb on + strand at 2574.362 kb on + strand at 2574.369 kb on - strand at 2574.414 kb on - strand at 2574.446 kb on - strand at 2574.458 kb on - strand at 2574.493 kb on - strand at 2574.521 kb on + strand at 2574.540 kb on - strand, within PGA1_c24670 at 2574.546 kb on - strand, within PGA1_c24670 at 2574.550 kb on + strand, within PGA1_c24670 at 2574.562 kb on + strand, within PGA1_c24670 at 2574.562 kb on + strand, within PGA1_c24670 at 2574.562 kb on + strand, within PGA1_c24670 at 2574.562 kb on + strand, within PGA1_c24670 at 2574.562 kb on + strand, within PGA1_c24670 at 2574.564 kb on + strand, within PGA1_c24670 at 2574.570 kb on - strand, within PGA1_c24670 at 2574.570 kb on - strand, within PGA1_c24670 at 2574.597 kb on + strand, within PGA1_c24670 at 2574.597 kb on + strand, within PGA1_c24670 at 2574.597 kb on + strand, within PGA1_c24670 at 2574.602 kb on + strand, within PGA1_c24670 at 2574.605 kb on - strand, within PGA1_c24670 at 2574.605 kb on - strand, within PGA1_c24670 at 2574.605 kb on - strand, within PGA1_c24670 at 2574.642 kb on + strand, within PGA1_c24670 at 2574.674 kb on + strand, within PGA1_c24670 at 2574.698 kb on + strand, within PGA1_c24670 at 2574.698 kb on + strand, within PGA1_c24670 at 2574.742 kb on - strand, within PGA1_c24670 at 2574.752 kb on + strand, within PGA1_c24670 at 2574.760 kb on - strand, within PGA1_c24670 at 2574.800 kb on + strand, within PGA1_c24670 at 2574.800 kb on + strand, within PGA1_c24670 at 2574.800 kb on + strand, within PGA1_c24670 at 2574.844 kb on - strand, within PGA1_c24670 at 2574.844 kb on - strand, within PGA1_c24670 at 2574.947 kb on - strand, within PGA1_c24670 at 2574.964 kb on + strand, within PGA1_c24670 at 2575.028 kb on + strand at 2575.036 kb on - strand at 2575.062 kb on - strand at 2575.073 kb on + strand at 2575.076 kb on - strand at 2575.133 kb on + strand at 2575.214 kb on - strand at 2575.225 kb on - strand, within PGA1_c24680 at 2575.296 kb on + strand, within PGA1_c24680 at 2575.296 kb on - strand, within PGA1_c24680 at 2575.323 kb on - strand, within PGA1_c24680 at 2575.332 kb on - strand, within PGA1_c24680 at 2575.354 kb on + strand, within PGA1_c24680 at 2575.426 kb on + strand, within PGA1_c24680 at 2575.465 kb on + strand, within PGA1_c24680 at 2575.473 kb on + strand, within PGA1_c24680 at 2575.481 kb on - strand, within PGA1_c24680 at 2575.481 kb on - strand, within PGA1_c24680 at 2575.597 kb on + strand, within PGA1_c24680 at 2575.650 kb on - strand, within PGA1_c24680 at 2575.719 kb on - strand, within PGA1_c24680 at 2575.796 kb on - strand, within PGA1_c24680 at 2575.847 kb on - strand, within PGA1_c24680 at 2575.873 kb on + strand, within PGA1_c24680 at 2575.881 kb on - strand, within PGA1_c24680 at 2575.890 kb on + strand, within PGA1_c24680 at 2576.048 kb on + strand at 2576.102 kb on + strand at 2576.107 kb on + strand at 2576.110 kb on - strand at 2576.110 kb on - strand at 2576.110 kb on - strand at 2576.115 kb on - strand, within PGA1_c24690 at 2576.115 kb on - strand, within PGA1_c24690 at 2576.115 kb on - strand, within PGA1_c24690 at 2576.115 kb on - strand, within PGA1_c24690 at 2576.115 kb on - strand, within PGA1_c24690 at 2576.147 kb on - strand, within PGA1_c24690 at 2576.215 kb on + strand, within PGA1_c24690 at 2576.222 kb on + strand, within PGA1_c24690 at 2576.223 kb on - strand, within PGA1_c24690 at 2576.248 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.257 kb on + strand, within PGA1_c24690 at 2576.265 kb on - strand, within PGA1_c24690 at 2576.265 kb on - strand, within PGA1_c24690 at 2576.265 kb on - strand, within PGA1_c24690 at 2576.275 kb on - strand, within PGA1_c24690 at 2576.308 kb on + strand, within PGA1_c24690 at 2576.321 kb on - strand, within PGA1_c24690 at 2576.326 kb on + strand, within PGA1_c24690 at 2576.341 kb on + strand, within PGA1_c24690 at 2576.344 kb on - strand, within PGA1_c24690 at 2576.344 kb on - strand, within PGA1_c24690 at 2576.344 kb on - strand, within PGA1_c24690 at 2576.346 kb on + strand, within PGA1_c24690 at 2576.349 kb on - strand, within PGA1_c24690 at 2576.354 kb on - strand, within PGA1_c24690 at 2576.384 kb on - strand at 2576.384 kb on - strand at 2576.401 kb on + strand at 2576.502 kb on + strand, within PGA1_c24700 at 2576.517 kb on + strand, within PGA1_c24700 at 2576.525 kb on - strand, within PGA1_c24700 at 2576.525 kb on - strand, within PGA1_c24700 at 2576.526 kb on + strand, within PGA1_c24700 at 2576.536 kb on + strand, within PGA1_c24700 at 2576.556 kb on + strand, within PGA1_c24700 at 2576.561 kb on - strand, within PGA1_c24700 at 2576.564 kb on - strand, within PGA1_c24700 at 2576.569 kb on - strand, within PGA1_c24700 at 2576.652 kb on - strand, within PGA1_c24700 at 2576.708 kb on - strand, within PGA1_c24700 at 2576.752 kb on - strand, within PGA1_c24700 at 2576.767 kb on - strand, within PGA1_c24700 at 2576.907 kb on + strand, within PGA1_c24700 at 2576.976 kb on - strand, within PGA1_c24700 at 2576.988 kb on + strand, within PGA1_c24700 at 2577.007 kb on - strand, within PGA1_c24700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 2,574,143 - -0.6 2,574,167 + +0.2 2,574,173 + +1.0 2,574,173 + +0.8 2,574,173 + -0.7 2,574,181 - +0.5 2,574,181 - -0.5 2,574,181 - +0.3 2,574,198 + +0.4 2,574,198 + -1.4 2,574,199 + +0.9 2,574,199 - -1.3 2,574,200 + +0.5 2,574,200 + +1.3 2,574,200 + -0.2 2,574,200 + +1.0 2,574,200 + -0.0 2,574,200 - +0.7 2,574,200 - +0.8 2,574,206 - -0.3 2,574,207 - +0.6 2,574,207 - +0.8 2,574,207 - +0.2 2,574,208 - +0.9 2,574,208 - +0.0 2,574,208 - +0.1 2,574,208 - -0.4 2,574,208 - -0.2 2,574,208 - -0.6 2,574,208 - -0.8 2,574,210 + -0.6 2,574,211 + -0.2 2,574,211 + -0.3 2,574,211 + +1.6 2,574,211 + +0.0 2,574,211 + +0.4 2,574,211 + +0.6 2,574,211 + -0.1 2,574,211 + -0.4 2,574,211 + -0.4 2,574,211 + +0.3 2,574,216 + -0.8 2,574,216 + +0.2 2,574,219 - -0.4 2,574,219 - +0.9 2,574,219 - -0.1 2,574,219 - -0.4 2,574,219 - +0.3 2,574,219 - +0.7 2,574,219 - +0.4 2,574,219 - -0.2 2,574,221 + +0.7 2,574,224 - +0.9 2,574,226 - +0.2 2,574,235 + +0.4 2,574,237 + +0.7 2,574,243 - +0.8 2,574,245 - +0.0 2,574,255 + -0.6 2,574,256 + -0.5 2,574,328 + +0.9 2,574,338 + +0.3 2,574,361 + +0.4 2,574,362 + -0.0 2,574,369 - +0.4 2,574,414 - +0.3 2,574,446 - -0.4 2,574,458 - +0.9 2,574,493 - +1.2 2,574,521 + +0.2 2,574,540 - PGA1_c24670 0.12 -0.1 2,574,546 - PGA1_c24670 0.14 +0.2 2,574,550 + PGA1_c24670 0.14 +0.0 2,574,562 + PGA1_c24670 0.16 -0.5 2,574,562 + PGA1_c24670 0.16 +0.7 2,574,562 + PGA1_c24670 0.16 +0.8 2,574,562 + PGA1_c24670 0.16 -0.3 2,574,562 + PGA1_c24670 0.16 +0.1 2,574,564 + PGA1_c24670 0.17 -0.4 2,574,570 - PGA1_c24670 0.17 +0.9 2,574,570 - PGA1_c24670 0.17 +0.0 2,574,597 + PGA1_c24670 0.22 -0.1 2,574,597 + PGA1_c24670 0.22 -0.4 2,574,597 + PGA1_c24670 0.22 -0.3 2,574,602 + PGA1_c24670 0.23 -1.8 2,574,605 - PGA1_c24670 0.23 +0.6 2,574,605 - PGA1_c24670 0.23 +0.5 2,574,605 - PGA1_c24670 0.23 +0.6 2,574,642 + PGA1_c24670 0.29 +0.5 2,574,674 + PGA1_c24670 0.35 -0.6 2,574,698 + PGA1_c24670 0.39 +0.7 2,574,698 + PGA1_c24670 0.39 +0.3 2,574,742 - PGA1_c24670 0.46 -0.5 2,574,752 + PGA1_c24670 0.48 +0.9 2,574,760 - PGA1_c24670 0.49 +0.5 2,574,800 + PGA1_c24670 0.56 +0.3 2,574,800 + PGA1_c24670 0.56 +0.6 2,574,800 + PGA1_c24670 0.56 -0.1 2,574,844 - PGA1_c24670 0.63 -0.3 2,574,844 - PGA1_c24670 0.63 -0.6 2,574,947 - PGA1_c24670 0.80 -0.2 2,574,964 + PGA1_c24670 0.83 -0.8 2,575,028 + +0.6 2,575,036 - +1.1 2,575,062 - -0.4 2,575,073 + -0.4 2,575,076 - +0.5 2,575,133 + -0.4 2,575,214 - +0.2 2,575,225 - PGA1_c24680 0.10 +0.8 2,575,296 + PGA1_c24680 0.18 +0.8 2,575,296 - PGA1_c24680 0.18 +0.2 2,575,323 - PGA1_c24680 0.21 +1.2 2,575,332 - PGA1_c24680 0.22 +0.6 2,575,354 + PGA1_c24680 0.24 -0.1 2,575,426 + PGA1_c24680 0.31 -0.3 2,575,465 + PGA1_c24680 0.35 +0.8 2,575,473 + PGA1_c24680 0.36 +0.2 2,575,481 - PGA1_c24680 0.37 +1.0 2,575,481 - PGA1_c24680 0.37 -0.1 2,575,597 + PGA1_c24680 0.49 -0.0 2,575,650 - PGA1_c24680 0.55 -0.2 2,575,719 - PGA1_c24680 0.62 +0.5 2,575,796 - PGA1_c24680 0.70 -0.6 2,575,847 - PGA1_c24680 0.75 +1.1 2,575,873 + PGA1_c24680 0.78 +1.0 2,575,881 - PGA1_c24680 0.79 -0.7 2,575,890 + PGA1_c24680 0.80 +0.6 2,576,048 + -1.0 2,576,102 + +0.1 2,576,107 + -0.1 2,576,110 - +0.6 2,576,110 - -0.8 2,576,110 - +0.5 2,576,115 - PGA1_c24690 0.11 -0.5 2,576,115 - PGA1_c24690 0.11 +0.9 2,576,115 - PGA1_c24690 0.11 +2.2 2,576,115 - PGA1_c24690 0.11 -0.6 2,576,115 - PGA1_c24690 0.11 +0.2 2,576,147 - PGA1_c24690 0.20 +0.6 2,576,215 + PGA1_c24690 0.40 -0.1 2,576,222 + PGA1_c24690 0.42 +0.8 2,576,223 - PGA1_c24690 0.42 +0.9 2,576,248 + PGA1_c24690 0.50 +1.3 2,576,257 + PGA1_c24690 0.53 -0.3 2,576,257 + PGA1_c24690 0.53 +0.8 2,576,257 + PGA1_c24690 0.53 +1.2 2,576,257 + PGA1_c24690 0.53 +0.4 2,576,257 + PGA1_c24690 0.53 +0.6 2,576,257 + PGA1_c24690 0.53 +0.7 2,576,257 + PGA1_c24690 0.53 +0.2 2,576,265 - PGA1_c24690 0.55 -1.6 2,576,265 - PGA1_c24690 0.55 -0.6 2,576,265 - PGA1_c24690 0.55 +0.9 2,576,275 - PGA1_c24690 0.58 +0.1 2,576,308 + PGA1_c24690 0.68 -1.2 2,576,321 - PGA1_c24690 0.71 +0.5 2,576,326 + PGA1_c24690 0.73 +0.6 2,576,341 + PGA1_c24690 0.77 -1.1 2,576,344 - PGA1_c24690 0.78 +1.3 2,576,344 - PGA1_c24690 0.78 -0.0 2,576,344 - PGA1_c24690 0.78 +0.1 2,576,346 + PGA1_c24690 0.79 +0.9 2,576,349 - PGA1_c24690 0.80 -0.6 2,576,354 - PGA1_c24690 0.81 +0.5 2,576,384 - -0.0 2,576,384 - -1.1 2,576,401 + -0.2 2,576,502 + PGA1_c24700 0.11 -1.3 2,576,517 + PGA1_c24700 0.13 -4.1 2,576,525 - PGA1_c24700 0.14 -3.4 2,576,525 - PGA1_c24700 0.14 -2.6 2,576,526 + PGA1_c24700 0.14 -2.9 2,576,536 + PGA1_c24700 0.15 -4.3 2,576,556 + PGA1_c24700 0.18 -3.6 2,576,561 - PGA1_c24700 0.18 -3.1 2,576,564 - PGA1_c24700 0.19 -2.6 2,576,569 - PGA1_c24700 0.19 -2.2 2,576,652 - PGA1_c24700 0.29 -2.7 2,576,708 - PGA1_c24700 0.36 -3.5 2,576,752 - PGA1_c24700 0.41 -3.4 2,576,767 - PGA1_c24700 0.43 -2.9 2,576,907 + PGA1_c24700 0.60 -2.2 2,576,976 - PGA1_c24700 0.68 -3.4 2,576,988 + PGA1_c24700 0.70 -1.9 2,577,007 - PGA1_c24700 0.72 -3.0
Or see this region's nucleotide sequence