Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c22040 and PGA1_c22050 are separated by 86 nucleotides PGA1_c22050 and PGA1_c22060 are separated by 55 nucleotides
PGA1_c22040: PGA1_c22040 - putative toxic anion resistance protein, at 2,284,492 to 2,285,688
_c22040
PGA1_c22050: PGA1_c22050 - Protein of unknown function (DUF2927)., at 2,285,775 to 2,286,659
_c22050
PGA1_c22060: PGA1_c22060 - Putative virion core protein (lumpy skin disease virus), at 2,286,715 to 2,287,893
_c22060
Position (kb)
2285
2286
2287 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2284.781 kb on - strand, within PGA1_c22040 at 2284.914 kb on + strand, within PGA1_c22040 at 2284.943 kb on + strand, within PGA1_c22040 at 2284.967 kb on - strand, within PGA1_c22040 at 2284.967 kb on - strand, within PGA1_c22040 at 2284.981 kb on + strand, within PGA1_c22040 at 2285.036 kb on - strand, within PGA1_c22040 at 2285.041 kb on + strand, within PGA1_c22040 at 2285.132 kb on - strand, within PGA1_c22040 at 2285.163 kb on - strand, within PGA1_c22040 at 2285.163 kb on - strand, within PGA1_c22040 at 2285.282 kb on + strand, within PGA1_c22040 at 2285.282 kb on + strand, within PGA1_c22040 at 2285.287 kb on + strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.290 kb on - strand, within PGA1_c22040 at 2285.292 kb on + strand, within PGA1_c22040 at 2285.292 kb on + strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.300 kb on - strand, within PGA1_c22040 at 2285.331 kb on + strand, within PGA1_c22040 at 2285.331 kb on + strand, within PGA1_c22040 at 2285.417 kb on + strand, within PGA1_c22040 at 2285.509 kb on - strand, within PGA1_c22040 at 2285.511 kb on + strand, within PGA1_c22040 at 2285.519 kb on - strand, within PGA1_c22040 at 2285.526 kb on + strand, within PGA1_c22040 at 2285.556 kb on + strand, within PGA1_c22040 at 2285.556 kb on + strand, within PGA1_c22040 at 2285.621 kb on - strand at 2285.626 kb on + strand at 2285.631 kb on + strand at 2285.679 kb on - strand at 2285.725 kb on + strand at 2285.764 kb on - strand at 2285.764 kb on - strand at 2285.771 kb on + strand at 2285.779 kb on - strand at 2285.788 kb on + strand at 2285.846 kb on + strand at 2285.945 kb on - strand, within PGA1_c22050 at 2285.958 kb on + strand, within PGA1_c22050 at 2286.030 kb on + strand, within PGA1_c22050 at 2286.037 kb on + strand, within PGA1_c22050 at 2286.045 kb on - strand, within PGA1_c22050 at 2286.153 kb on + strand, within PGA1_c22050 at 2286.161 kb on - strand, within PGA1_c22050 at 2286.174 kb on + strand, within PGA1_c22050 at 2286.252 kb on - strand, within PGA1_c22050 at 2286.388 kb on + strand, within PGA1_c22050 at 2286.406 kb on - strand, within PGA1_c22050 at 2286.433 kb on + strand, within PGA1_c22050 at 2286.458 kb on + strand, within PGA1_c22050 at 2286.460 kb on + strand, within PGA1_c22050 at 2286.460 kb on + strand, within PGA1_c22050 at 2286.460 kb on + strand, within PGA1_c22050 at 2286.460 kb on + strand, within PGA1_c22050 at 2286.460 kb on + strand, within PGA1_c22050 at 2286.468 kb on - strand, within PGA1_c22050 at 2286.468 kb on - strand, within PGA1_c22050 at 2286.468 kb on - strand, within PGA1_c22050 at 2286.468 kb on - strand, within PGA1_c22050 at 2286.468 kb on - strand, within PGA1_c22050 at 2286.568 kb on - strand, within PGA1_c22050 at 2286.571 kb on + strand at 2286.574 kb on - strand at 2286.772 kb on - strand at 2286.869 kb on + strand, within PGA1_c22060 at 2286.902 kb on + strand, within PGA1_c22060 at 2287.160 kb on - strand, within PGA1_c22060 at 2287.260 kb on + strand, within PGA1_c22060 at 2287.277 kb on + strand, within PGA1_c22060 at 2287.285 kb on - strand, within PGA1_c22060 at 2287.285 kb on - strand, within PGA1_c22060 at 2287.285 kb on - strand, within PGA1_c22060 at 2287.290 kb on - strand, within PGA1_c22060 at 2287.296 kb on + strand, within PGA1_c22060 at 2287.327 kb on + strand, within PGA1_c22060 at 2287.358 kb on - strand, within PGA1_c22060 at 2287.413 kb on + strand, within PGA1_c22060 at 2287.522 kb on + strand, within PGA1_c22060
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 2,284,781 - PGA1_c22040 0.24 +0.7 2,284,914 + PGA1_c22040 0.35 +0.7 2,284,943 + PGA1_c22040 0.38 -0.7 2,284,967 - PGA1_c22040 0.40 -0.1 2,284,967 - PGA1_c22040 0.40 -0.5 2,284,981 + PGA1_c22040 0.41 +0.4 2,285,036 - PGA1_c22040 0.45 -0.2 2,285,041 + PGA1_c22040 0.46 -1.3 2,285,132 - PGA1_c22040 0.53 +0.2 2,285,163 - PGA1_c22040 0.56 +0.9 2,285,163 - PGA1_c22040 0.56 -0.2 2,285,282 + PGA1_c22040 0.66 -0.8 2,285,282 + PGA1_c22040 0.66 -0.4 2,285,287 + PGA1_c22040 0.66 +0.3 2,285,290 - PGA1_c22040 0.67 +0.1 2,285,290 - PGA1_c22040 0.67 -1.2 2,285,290 - PGA1_c22040 0.67 -0.6 2,285,290 - PGA1_c22040 0.67 +0.4 2,285,292 + PGA1_c22040 0.67 +1.2 2,285,292 + PGA1_c22040 0.67 -0.7 2,285,300 - PGA1_c22040 0.68 -0.8 2,285,300 - PGA1_c22040 0.68 +0.2 2,285,300 - PGA1_c22040 0.68 -2.0 2,285,300 - PGA1_c22040 0.68 +0.2 2,285,331 + PGA1_c22040 0.70 +0.2 2,285,331 + PGA1_c22040 0.70 +0.3 2,285,417 + PGA1_c22040 0.77 +0.0 2,285,509 - PGA1_c22040 0.85 -0.9 2,285,511 + PGA1_c22040 0.85 -0.1 2,285,519 - PGA1_c22040 0.86 -1.2 2,285,526 + PGA1_c22040 0.86 +0.4 2,285,556 + PGA1_c22040 0.89 -0.5 2,285,556 + PGA1_c22040 0.89 -1.1 2,285,621 - +0.2 2,285,626 + -0.1 2,285,631 + +0.3 2,285,679 - +0.1 2,285,725 + -0.0 2,285,764 - -0.5 2,285,764 - -0.3 2,285,771 + -0.8 2,285,779 - -0.1 2,285,788 + -0.3 2,285,846 + +0.1 2,285,945 - PGA1_c22050 0.19 +0.8 2,285,958 + PGA1_c22050 0.21 +0.4 2,286,030 + PGA1_c22050 0.29 -0.4 2,286,037 + PGA1_c22050 0.30 -0.1 2,286,045 - PGA1_c22050 0.31 +0.8 2,286,153 + PGA1_c22050 0.43 +0.4 2,286,161 - PGA1_c22050 0.44 +0.3 2,286,174 + PGA1_c22050 0.45 +0.0 2,286,252 - PGA1_c22050 0.54 +0.4 2,286,388 + PGA1_c22050 0.69 +1.5 2,286,406 - PGA1_c22050 0.71 +0.3 2,286,433 + PGA1_c22050 0.74 +0.1 2,286,458 + PGA1_c22050 0.77 -0.2 2,286,460 + PGA1_c22050 0.77 +0.5 2,286,460 + PGA1_c22050 0.77 +0.6 2,286,460 + PGA1_c22050 0.77 +0.3 2,286,460 + PGA1_c22050 0.77 +0.4 2,286,460 + PGA1_c22050 0.77 +0.7 2,286,468 - PGA1_c22050 0.78 -0.1 2,286,468 - PGA1_c22050 0.78 +0.3 2,286,468 - PGA1_c22050 0.78 +0.2 2,286,468 - PGA1_c22050 0.78 -0.5 2,286,468 - PGA1_c22050 0.78 +0.3 2,286,568 - PGA1_c22050 0.90 +0.4 2,286,571 + +0.6 2,286,574 - +0.6 2,286,772 - -1.0 2,286,869 + PGA1_c22060 0.13 +0.7 2,286,902 + PGA1_c22060 0.16 +0.0 2,287,160 - PGA1_c22060 0.38 +0.7 2,287,260 + PGA1_c22060 0.46 -1.2 2,287,277 + PGA1_c22060 0.48 -1.2 2,287,285 - PGA1_c22060 0.48 -0.7 2,287,285 - PGA1_c22060 0.48 +2.6 2,287,285 - PGA1_c22060 0.48 +0.6 2,287,290 - PGA1_c22060 0.49 +1.0 2,287,296 + PGA1_c22060 0.49 +1.1 2,287,327 + PGA1_c22060 0.52 -0.1 2,287,358 - PGA1_c22060 0.55 +0.6 2,287,413 + PGA1_c22060 0.59 -0.1 2,287,522 + PGA1_c22060 0.68 +0.0
Or see this region's nucleotide sequence