Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22050

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c22040 and PGA1_c22050 are separated by 86 nucleotidesPGA1_c22050 and PGA1_c22060 are separated by 55 nucleotides PGA1_c22040: PGA1_c22040 - putative toxic anion resistance protein, at 2,284,492 to 2,285,688 _c22040 PGA1_c22050: PGA1_c22050 - Protein of unknown function (DUF2927)., at 2,285,775 to 2,286,659 _c22050 PGA1_c22060: PGA1_c22060 - Putative virion core protein (lumpy skin disease virus), at 2,286,715 to 2,287,893 _c22060 Position (kb) 2285 2286 2287Strain fitness (log2 ratio) -2 -1 0 1 2at 2284.781 kb on - strand, within PGA1_c22040at 2284.914 kb on + strand, within PGA1_c22040at 2284.943 kb on + strand, within PGA1_c22040at 2284.967 kb on - strand, within PGA1_c22040at 2284.967 kb on - strand, within PGA1_c22040at 2284.981 kb on + strand, within PGA1_c22040at 2285.036 kb on - strand, within PGA1_c22040at 2285.041 kb on + strand, within PGA1_c22040at 2285.132 kb on - strand, within PGA1_c22040at 2285.163 kb on - strand, within PGA1_c22040at 2285.163 kb on - strand, within PGA1_c22040at 2285.282 kb on + strand, within PGA1_c22040at 2285.282 kb on + strand, within PGA1_c22040at 2285.287 kb on + strand, within PGA1_c22040at 2285.290 kb on - strand, within PGA1_c22040at 2285.290 kb on - strand, within PGA1_c22040at 2285.290 kb on - strand, within PGA1_c22040at 2285.290 kb on - strand, within PGA1_c22040at 2285.292 kb on + strand, within PGA1_c22040at 2285.292 kb on + strand, within PGA1_c22040at 2285.300 kb on - strand, within PGA1_c22040at 2285.300 kb on - strand, within PGA1_c22040at 2285.300 kb on - strand, within PGA1_c22040at 2285.300 kb on - strand, within PGA1_c22040at 2285.331 kb on + strand, within PGA1_c22040at 2285.331 kb on + strand, within PGA1_c22040at 2285.417 kb on + strand, within PGA1_c22040at 2285.509 kb on - strand, within PGA1_c22040at 2285.511 kb on + strand, within PGA1_c22040at 2285.519 kb on - strand, within PGA1_c22040at 2285.526 kb on + strand, within PGA1_c22040at 2285.556 kb on + strand, within PGA1_c22040at 2285.556 kb on + strand, within PGA1_c22040at 2285.621 kb on - strandat 2285.626 kb on + strandat 2285.631 kb on + strandat 2285.679 kb on - strandat 2285.725 kb on + strandat 2285.764 kb on - strandat 2285.764 kb on - strandat 2285.771 kb on + strandat 2285.779 kb on - strandat 2285.788 kb on + strandat 2285.846 kb on + strandat 2285.945 kb on - strand, within PGA1_c22050at 2285.958 kb on + strand, within PGA1_c22050at 2286.030 kb on + strand, within PGA1_c22050at 2286.037 kb on + strand, within PGA1_c22050at 2286.045 kb on - strand, within PGA1_c22050at 2286.153 kb on + strand, within PGA1_c22050at 2286.161 kb on - strand, within PGA1_c22050at 2286.174 kb on + strand, within PGA1_c22050at 2286.252 kb on - strand, within PGA1_c22050at 2286.388 kb on + strand, within PGA1_c22050at 2286.406 kb on - strand, within PGA1_c22050at 2286.433 kb on + strand, within PGA1_c22050at 2286.458 kb on + strand, within PGA1_c22050at 2286.460 kb on + strand, within PGA1_c22050at 2286.460 kb on + strand, within PGA1_c22050at 2286.460 kb on + strand, within PGA1_c22050at 2286.460 kb on + strand, within PGA1_c22050at 2286.460 kb on + strand, within PGA1_c22050at 2286.468 kb on - strand, within PGA1_c22050at 2286.468 kb on - strand, within PGA1_c22050at 2286.468 kb on - strand, within PGA1_c22050at 2286.468 kb on - strand, within PGA1_c22050at 2286.468 kb on - strand, within PGA1_c22050at 2286.568 kb on - strand, within PGA1_c22050at 2286.571 kb on + strandat 2286.574 kb on - strandat 2286.772 kb on - strandat 2286.869 kb on + strand, within PGA1_c22060at 2286.902 kb on + strand, within PGA1_c22060at 2287.160 kb on - strand, within PGA1_c22060at 2287.260 kb on + strand, within PGA1_c22060at 2287.277 kb on + strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.285 kb on - strand, within PGA1_c22060at 2287.290 kb on - strand, within PGA1_c22060at 2287.296 kb on + strand, within PGA1_c22060at 2287.327 kb on + strand, within PGA1_c22060at 2287.358 kb on - strand, within PGA1_c22060at 2287.413 kb on + strand, within PGA1_c22060at 2287.522 kb on + strand, within PGA1_c22060

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,284,781 - PGA1_c22040 0.24 +0.7
2,284,914 + PGA1_c22040 0.35 +0.7
2,284,943 + PGA1_c22040 0.38 -0.7
2,284,967 - PGA1_c22040 0.40 -0.1
2,284,967 - PGA1_c22040 0.40 -0.5
2,284,981 + PGA1_c22040 0.41 +0.4
2,285,036 - PGA1_c22040 0.45 -0.2
2,285,041 + PGA1_c22040 0.46 -1.3
2,285,132 - PGA1_c22040 0.53 +0.2
2,285,163 - PGA1_c22040 0.56 +0.9
2,285,163 - PGA1_c22040 0.56 -0.2
2,285,282 + PGA1_c22040 0.66 -0.8
2,285,282 + PGA1_c22040 0.66 -0.4
2,285,287 + PGA1_c22040 0.66 +0.3
2,285,290 - PGA1_c22040 0.67 +0.1
2,285,290 - PGA1_c22040 0.67 -1.2
2,285,290 - PGA1_c22040 0.67 -0.6
2,285,290 - PGA1_c22040 0.67 +0.4
2,285,292 + PGA1_c22040 0.67 +1.2
2,285,292 + PGA1_c22040 0.67 -0.7
2,285,300 - PGA1_c22040 0.68 -0.8
2,285,300 - PGA1_c22040 0.68 +0.2
2,285,300 - PGA1_c22040 0.68 -2.0
2,285,300 - PGA1_c22040 0.68 +0.2
2,285,331 + PGA1_c22040 0.70 +0.2
2,285,331 + PGA1_c22040 0.70 +0.3
2,285,417 + PGA1_c22040 0.77 +0.0
2,285,509 - PGA1_c22040 0.85 -0.9
2,285,511 + PGA1_c22040 0.85 -0.1
2,285,519 - PGA1_c22040 0.86 -1.2
2,285,526 + PGA1_c22040 0.86 +0.4
2,285,556 + PGA1_c22040 0.89 -0.5
2,285,556 + PGA1_c22040 0.89 -1.1
2,285,621 - +0.2
2,285,626 + -0.1
2,285,631 + +0.3
2,285,679 - +0.1
2,285,725 + -0.0
2,285,764 - -0.5
2,285,764 - -0.3
2,285,771 + -0.8
2,285,779 - -0.1
2,285,788 + -0.3
2,285,846 + +0.1
2,285,945 - PGA1_c22050 0.19 +0.8
2,285,958 + PGA1_c22050 0.21 +0.4
2,286,030 + PGA1_c22050 0.29 -0.4
2,286,037 + PGA1_c22050 0.30 -0.1
2,286,045 - PGA1_c22050 0.31 +0.8
2,286,153 + PGA1_c22050 0.43 +0.4
2,286,161 - PGA1_c22050 0.44 +0.3
2,286,174 + PGA1_c22050 0.45 +0.0
2,286,252 - PGA1_c22050 0.54 +0.4
2,286,388 + PGA1_c22050 0.69 +1.5
2,286,406 - PGA1_c22050 0.71 +0.3
2,286,433 + PGA1_c22050 0.74 +0.1
2,286,458 + PGA1_c22050 0.77 -0.2
2,286,460 + PGA1_c22050 0.77 +0.5
2,286,460 + PGA1_c22050 0.77 +0.6
2,286,460 + PGA1_c22050 0.77 +0.3
2,286,460 + PGA1_c22050 0.77 +0.4
2,286,460 + PGA1_c22050 0.77 +0.7
2,286,468 - PGA1_c22050 0.78 -0.1
2,286,468 - PGA1_c22050 0.78 +0.3
2,286,468 - PGA1_c22050 0.78 +0.2
2,286,468 - PGA1_c22050 0.78 -0.5
2,286,468 - PGA1_c22050 0.78 +0.3
2,286,568 - PGA1_c22050 0.90 +0.4
2,286,571 + +0.6
2,286,574 - +0.6
2,286,772 - -1.0
2,286,869 + PGA1_c22060 0.13 +0.7
2,286,902 + PGA1_c22060 0.16 +0.0
2,287,160 - PGA1_c22060 0.38 +0.7
2,287,260 + PGA1_c22060 0.46 -1.2
2,287,277 + PGA1_c22060 0.48 -1.2
2,287,285 - PGA1_c22060 0.48 -0.7
2,287,285 - PGA1_c22060 0.48 +2.6
2,287,285 - PGA1_c22060 0.48 +0.6
2,287,290 - PGA1_c22060 0.49 +1.0
2,287,296 + PGA1_c22060 0.49 +1.1
2,287,327 + PGA1_c22060 0.52 -0.1
2,287,358 - PGA1_c22060 0.55 +0.6
2,287,413 + PGA1_c22060 0.59 -0.1
2,287,522 + PGA1_c22060 0.68 +0.0

Or see this region's nucleotide sequence