Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19010 and PGA1_c19030 are separated by 297 nucleotides PGA1_c19030 and PGA1_c19040 overlap by 4 nucleotides
PGA1_c19010: PGA1_c19010 - Uncharacterized protein conserved in bacteria, at 1,972,794 to 1,973,465
_c19010
PGA1_c19030: PGA1_c19030 - putative efflux transporter, RND family, MFP subunit, at 1,973,763 to 1,975,055
_c19030
PGA1_c19040: PGA1_c19040 - multidrug resistance protein MdtC, at 1,975,052 to 1,978,858
_c19040
Position (kb)
1973
1974
1975
1976 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1972.876 kb on - strand, within PGA1_c19010 at 1972.927 kb on + strand, within PGA1_c19010 at 1972.935 kb on - strand, within PGA1_c19010 at 1972.935 kb on - strand, within PGA1_c19010 at 1972.967 kb on - strand, within PGA1_c19010 at 1973.048 kb on + strand, within PGA1_c19010 at 1973.211 kb on - strand, within PGA1_c19010 at 1973.270 kb on - strand, within PGA1_c19010 at 1973.423 kb on + strand at 1973.449 kb on - strand at 1973.564 kb on - strand at 1973.572 kb on + strand at 1973.620 kb on + strand at 1973.716 kb on + strand at 1973.716 kb on + strand at 1973.724 kb on - strand at 1973.725 kb on - strand at 1973.753 kb on - strand at 1973.753 kb on - strand at 1973.755 kb on + strand at 1973.765 kb on - strand at 1973.775 kb on - strand at 1973.793 kb on - strand at 1973.805 kb on + strand at 1973.808 kb on - strand at 1973.810 kb on + strand at 1973.810 kb on + strand at 1973.813 kb on - strand at 1973.818 kb on - strand at 1973.872 kb on - strand at 1973.872 kb on - strand at 1973.884 kb on + strand at 1973.892 kb on - strand at 1973.949 kb on - strand, within PGA1_c19030 at 1974.005 kb on + strand, within PGA1_c19030 at 1974.005 kb on + strand, within PGA1_c19030 at 1974.005 kb on + strand, within PGA1_c19030 at 1974.005 kb on + strand, within PGA1_c19030 at 1974.008 kb on - strand, within PGA1_c19030 at 1974.013 kb on - strand, within PGA1_c19030 at 1974.034 kb on + strand, within PGA1_c19030 at 1974.044 kb on - strand, within PGA1_c19030 at 1974.071 kb on + strand, within PGA1_c19030 at 1974.097 kb on + strand, within PGA1_c19030 at 1974.102 kb on - strand, within PGA1_c19030 at 1974.115 kb on - strand, within PGA1_c19030 at 1974.127 kb on - strand, within PGA1_c19030 at 1974.134 kb on + strand, within PGA1_c19030 at 1974.134 kb on + strand, within PGA1_c19030 at 1974.134 kb on + strand, within PGA1_c19030 at 1974.134 kb on + strand, within PGA1_c19030 at 1974.134 kb on + strand, within PGA1_c19030 at 1974.142 kb on - strand, within PGA1_c19030 at 1974.142 kb on - strand, within PGA1_c19030 at 1974.181 kb on + strand, within PGA1_c19030 at 1974.197 kb on + strand, within PGA1_c19030 at 1974.272 kb on + strand, within PGA1_c19030 at 1974.272 kb on + strand, within PGA1_c19030 at 1974.280 kb on - strand, within PGA1_c19030 at 1974.355 kb on - strand, within PGA1_c19030 at 1974.378 kb on - strand, within PGA1_c19030 at 1974.404 kb on - strand, within PGA1_c19030 at 1974.546 kb on - strand, within PGA1_c19030 at 1974.660 kb on - strand, within PGA1_c19030 at 1974.678 kb on + strand, within PGA1_c19030 at 1974.709 kb on + strand, within PGA1_c19030 at 1974.714 kb on + strand, within PGA1_c19030 at 1974.851 kb on - strand, within PGA1_c19030 at 1974.899 kb on - strand, within PGA1_c19030 at 1975.016 kb on + strand at 1975.024 kb on - strand at 1975.026 kb on - strand at 1975.033 kb on + strand at 1975.041 kb on - strand at 1975.062 kb on - strand at 1975.121 kb on - strand at 1975.197 kb on - strand at 1975.226 kb on - strand at 1975.243 kb on + strand at 1975.251 kb on - strand at 1975.251 kb on - strand at 1975.359 kb on - strand at 1975.419 kb on - strand at 1975.483 kb on + strand, within PGA1_c19040 at 1975.483 kb on + strand, within PGA1_c19040 at 1975.491 kb on - strand, within PGA1_c19040 at 1975.496 kb on - strand, within PGA1_c19040 at 1975.511 kb on - strand, within PGA1_c19040 at 1975.534 kb on - strand, within PGA1_c19040 at 1975.609 kb on + strand, within PGA1_c19040 at 1975.639 kb on + strand, within PGA1_c19040 at 1975.640 kb on - strand, within PGA1_c19040 at 1975.655 kb on - strand, within PGA1_c19040 at 1975.662 kb on + strand, within PGA1_c19040 at 1975.667 kb on + strand, within PGA1_c19040 at 1975.670 kb on - strand, within PGA1_c19040 at 1975.675 kb on - strand, within PGA1_c19040 at 1975.703 kb on + strand, within PGA1_c19040 at 1975.739 kb on + strand, within PGA1_c19040 at 1975.746 kb on + strand, within PGA1_c19040 at 1975.754 kb on - strand, within PGA1_c19040 at 1975.754 kb on - strand, within PGA1_c19040 at 1975.754 kb on - strand, within PGA1_c19040 at 1975.835 kb on - strand, within PGA1_c19040 at 1975.884 kb on + strand, within PGA1_c19040 at 1975.940 kb on - strand, within PGA1_c19040 at 1975.940 kb on - strand, within PGA1_c19040
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,972,876 - PGA1_c19010 0.12 -0.6 1,972,927 + PGA1_c19010 0.20 -2.1 1,972,935 - PGA1_c19010 0.21 -0.5 1,972,935 - PGA1_c19010 0.21 -1.9 1,972,967 - PGA1_c19010 0.26 -3.4 1,973,048 + PGA1_c19010 0.38 -2.8 1,973,211 - PGA1_c19010 0.62 -1.2 1,973,270 - PGA1_c19010 0.71 -0.5 1,973,423 + -2.5 1,973,449 - -0.5 1,973,564 - -0.5 1,973,572 + -0.9 1,973,620 + +0.4 1,973,716 + -0.3 1,973,716 + +0.4 1,973,724 - -0.0 1,973,725 - +0.4 1,973,753 - +1.6 1,973,753 - +1.1 1,973,755 + +0.3 1,973,765 - +0.2 1,973,775 - -0.6 1,973,793 - -1.6 1,973,805 + -0.3 1,973,808 - -0.7 1,973,810 + +0.5 1,973,810 + +0.9 1,973,813 - -0.3 1,973,818 - -0.3 1,973,872 - +1.3 1,973,872 - +2.2 1,973,884 + +0.3 1,973,892 - -0.3 1,973,949 - PGA1_c19030 0.14 +0.6 1,974,005 + PGA1_c19030 0.19 -0.4 1,974,005 + PGA1_c19030 0.19 +0.6 1,974,005 + PGA1_c19030 0.19 -0.6 1,974,005 + PGA1_c19030 0.19 -0.8 1,974,008 - PGA1_c19030 0.19 +0.6 1,974,013 - PGA1_c19030 0.19 +0.3 1,974,034 + PGA1_c19030 0.21 +0.5 1,974,044 - PGA1_c19030 0.22 +0.5 1,974,071 + PGA1_c19030 0.24 +0.3 1,974,097 + PGA1_c19030 0.26 -0.9 1,974,102 - PGA1_c19030 0.26 +1.0 1,974,115 - PGA1_c19030 0.27 +0.1 1,974,127 - PGA1_c19030 0.28 +0.1 1,974,134 + PGA1_c19030 0.29 +0.1 1,974,134 + PGA1_c19030 0.29 +0.3 1,974,134 + PGA1_c19030 0.29 +0.4 1,974,134 + PGA1_c19030 0.29 -0.2 1,974,134 + PGA1_c19030 0.29 +0.4 1,974,142 - PGA1_c19030 0.29 +1.9 1,974,142 - PGA1_c19030 0.29 +0.3 1,974,181 + PGA1_c19030 0.32 -0.2 1,974,197 + PGA1_c19030 0.34 -0.8 1,974,272 + PGA1_c19030 0.39 +0.0 1,974,272 + PGA1_c19030 0.39 +0.4 1,974,280 - PGA1_c19030 0.40 +0.6 1,974,355 - PGA1_c19030 0.46 +0.1 1,974,378 - PGA1_c19030 0.48 +0.1 1,974,404 - PGA1_c19030 0.50 -0.3 1,974,546 - PGA1_c19030 0.61 +0.1 1,974,660 - PGA1_c19030 0.69 +0.4 1,974,678 + PGA1_c19030 0.71 +0.4 1,974,709 + PGA1_c19030 0.73 +0.1 1,974,714 + PGA1_c19030 0.74 +0.9 1,974,851 - PGA1_c19030 0.84 +1.1 1,974,899 - PGA1_c19030 0.88 +1.3 1,975,016 + +1.5 1,975,024 - +0.3 1,975,026 - +0.4 1,975,033 + +0.6 1,975,041 - +0.4 1,975,062 - +0.7 1,975,121 - +0.2 1,975,197 - +0.7 1,975,226 - +0.5 1,975,243 + -0.8 1,975,251 - +0.1 1,975,251 - +0.6 1,975,359 - -0.8 1,975,419 - +0.0 1,975,483 + PGA1_c19040 0.11 +0.6 1,975,483 + PGA1_c19040 0.11 +0.9 1,975,491 - PGA1_c19040 0.12 -0.3 1,975,496 - PGA1_c19040 0.12 -0.6 1,975,511 - PGA1_c19040 0.12 +0.1 1,975,534 - PGA1_c19040 0.13 +0.0 1,975,609 + PGA1_c19040 0.15 -0.7 1,975,639 + PGA1_c19040 0.15 -0.1 1,975,640 - PGA1_c19040 0.15 +0.1 1,975,655 - PGA1_c19040 0.16 -0.5 1,975,662 + PGA1_c19040 0.16 +0.2 1,975,667 + PGA1_c19040 0.16 -0.1 1,975,670 - PGA1_c19040 0.16 -0.1 1,975,675 - PGA1_c19040 0.16 -0.3 1,975,703 + PGA1_c19040 0.17 -0.5 1,975,739 + PGA1_c19040 0.18 -0.1 1,975,746 + PGA1_c19040 0.18 -0.3 1,975,754 - PGA1_c19040 0.18 +0.3 1,975,754 - PGA1_c19040 0.18 +1.2 1,975,754 - PGA1_c19040 0.18 +0.3 1,975,835 - PGA1_c19040 0.21 +0.3 1,975,884 + PGA1_c19040 0.22 +0.8 1,975,940 - PGA1_c19040 0.23 +0.1 1,975,940 - PGA1_c19040 0.23 +0.1
Or see this region's nucleotide sequence