Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15300 and PGA1_c15310 are separated by 148 nucleotides PGA1_c15310 and PGA1_c15320 are separated by 60 nucleotides
PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219
_c15300
PGA1_c15310: PGA1_c15310 - multidrug transporter EmrE, at 1,596,368 to 1,596,703
_c15310
PGA1_c15320: PGA1_c15320 - Predicted hydrolases of HD superfamily, at 1,596,764 to 1,597,936
_c15320
Position (kb)
1596
1597 Strain fitness (log2 ratio)
-1
0
1 at 1595.505 kb on - strand, within PGA1_c15300 at 1595.523 kb on + strand, within PGA1_c15300 at 1595.523 kb on + strand, within PGA1_c15300 at 1595.531 kb on - strand, within PGA1_c15300 at 1595.737 kb on - strand, within PGA1_c15300 at 1595.739 kb on - strand, within PGA1_c15300 at 1596.019 kb on - strand, within PGA1_c15300 at 1596.123 kb on - strand at 1596.221 kb on - strand at 1596.316 kb on + strand at 1596.316 kb on + strand at 1596.319 kb on - strand at 1596.352 kb on + strand at 1596.352 kb on + strand at 1596.352 kb on + strand at 1596.358 kb on - strand at 1596.358 kb on - strand at 1596.360 kb on - strand at 1596.381 kb on - strand at 1596.383 kb on - strand at 1596.431 kb on + strand, within PGA1_c15310 at 1596.537 kb on + strand, within PGA1_c15310 at 1596.577 kb on + strand, within PGA1_c15310 at 1596.585 kb on - strand, within PGA1_c15310 at 1596.607 kb on + strand, within PGA1_c15310 at 1596.615 kb on - strand, within PGA1_c15310 at 1596.682 kb on + strand at 1596.704 kb on + strand at 1596.704 kb on + strand at 1596.712 kb on - strand at 1596.712 kb on - strand at 1596.762 kb on + strand at 1596.770 kb on - strand at 1596.815 kb on + strand at 1596.975 kb on - strand, within PGA1_c15320 at 1597.095 kb on + strand, within PGA1_c15320 at 1597.156 kb on + strand, within PGA1_c15320 at 1597.164 kb on - strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.197 kb on + strand, within PGA1_c15320 at 1597.200 kb on - strand, within PGA1_c15320 at 1597.205 kb on - strand, within PGA1_c15320 at 1597.321 kb on + strand, within PGA1_c15320 at 1597.368 kb on + strand, within PGA1_c15320 at 1597.391 kb on + strand, within PGA1_c15320 at 1597.398 kb on + strand, within PGA1_c15320 at 1597.399 kb on - strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.437 kb on + strand, within PGA1_c15320 at 1597.445 kb on - strand, within PGA1_c15320 at 1597.535 kb on - strand, within PGA1_c15320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,595,505 - PGA1_c15300 0.61 -1.2 1,595,523 + PGA1_c15300 0.62 -0.9 1,595,523 + PGA1_c15300 0.62 +0.7 1,595,531 - PGA1_c15300 0.62 -0.4 1,595,737 - PGA1_c15300 0.73 +0.3 1,595,739 - PGA1_c15300 0.74 -0.1 1,596,019 - PGA1_c15300 0.89 -0.8 1,596,123 - +1.4 1,596,221 - -0.3 1,596,316 + +0.1 1,596,316 + +0.4 1,596,319 - +0.2 1,596,352 + -0.8 1,596,352 + +0.5 1,596,352 + +1.5 1,596,358 - +0.6 1,596,358 - +0.7 1,596,360 - +0.0 1,596,381 - +0.3 1,596,383 - -1.3 1,596,431 + PGA1_c15310 0.19 +0.3 1,596,537 + PGA1_c15310 0.50 +0.5 1,596,577 + PGA1_c15310 0.62 -0.2 1,596,585 - PGA1_c15310 0.65 +0.5 1,596,607 + PGA1_c15310 0.71 +0.6 1,596,615 - PGA1_c15310 0.74 -0.1 1,596,682 + +1.0 1,596,704 + -0.1 1,596,704 + +1.5 1,596,712 - -0.1 1,596,712 - -0.2 1,596,762 + -0.5 1,596,770 - +0.3 1,596,815 + -1.3 1,596,975 - PGA1_c15320 0.18 -0.1 1,597,095 + PGA1_c15320 0.28 -0.2 1,597,156 + PGA1_c15320 0.33 +0.4 1,597,164 - PGA1_c15320 0.34 -0.3 1,597,197 + PGA1_c15320 0.37 +0.3 1,597,197 + PGA1_c15320 0.37 +0.8 1,597,200 - PGA1_c15320 0.37 +1.2 1,597,205 - PGA1_c15320 0.38 -0.1 1,597,321 + PGA1_c15320 0.47 -0.1 1,597,368 + PGA1_c15320 0.51 -0.2 1,597,391 + PGA1_c15320 0.53 +0.3 1,597,398 + PGA1_c15320 0.54 -1.4 1,597,399 - PGA1_c15320 0.54 -0.5 1,597,437 + PGA1_c15320 0.57 -1.2 1,597,437 + PGA1_c15320 0.57 +0.1 1,597,437 + PGA1_c15320 0.57 +0.4 1,597,445 - PGA1_c15320 0.58 +0.1 1,597,535 - PGA1_c15320 0.66 +0.6
Or see this region's nucleotide sequence