Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15140 and PGA1_c15150 are separated by 224 nucleotides PGA1_c15150 and PGA1_c15160 are separated by 266 nucleotides
PGA1_c15140: PGA1_c15140 - DNA gyrase subunit GyrA, at 1,573,176 to 1,575,902
_c15140
PGA1_c15150: PGA1_c15150 - protein Usg, at 1,576,127 to 1,576,396
_c15150
PGA1_c15160: PGA1_c15160 - glucose-6-phosphate 1-dehydrogenase, at 1,576,663 to 1,578,150
_c15160
Position (kb)
1576
1577 Strain fitness (log2 ratio)
-1
0
1
2 at 1576.014 kb on + strand at 1576.014 kb on + strand at 1576.022 kb on - strand at 1576.022 kb on - strand at 1576.055 kb on + strand at 1576.085 kb on + strand at 1576.093 kb on - strand at 1576.093 kb on - strand at 1576.103 kb on - strand at 1576.104 kb on - strand at 1576.109 kb on + strand at 1576.117 kb on - strand at 1576.117 kb on - strand at 1576.166 kb on + strand, within PGA1_c15150 at 1576.169 kb on - strand, within PGA1_c15150 at 1576.174 kb on - strand, within PGA1_c15150 at 1576.174 kb on - strand, within PGA1_c15150 at 1576.179 kb on - strand, within PGA1_c15150 at 1576.181 kb on - strand, within PGA1_c15150 at 1576.184 kb on - strand, within PGA1_c15150 at 1576.191 kb on + strand, within PGA1_c15150 at 1576.214 kb on + strand, within PGA1_c15150 at 1576.222 kb on - strand, within PGA1_c15150 at 1576.239 kb on + strand, within PGA1_c15150 at 1576.284 kb on + strand, within PGA1_c15150 at 1576.284 kb on + strand, within PGA1_c15150 at 1576.292 kb on - strand, within PGA1_c15150 at 1576.326 kb on + strand, within PGA1_c15150 at 1576.334 kb on - strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.369 kb on + strand, within PGA1_c15150 at 1576.377 kb on - strand at 1576.377 kb on - strand at 1576.377 kb on - strand at 1576.377 kb on - strand at 1576.377 kb on - strand at 1576.387 kb on - strand at 1576.452 kb on + strand at 1576.459 kb on + strand at 1576.459 kb on + strand at 1576.460 kb on - strand at 1576.465 kb on - strand at 1576.465 kb on - strand at 1576.465 kb on - strand at 1576.467 kb on - strand at 1576.490 kb on - strand at 1576.525 kb on - strand at 1576.570 kb on - strand at 1576.581 kb on + strand at 1576.637 kb on - strand at 1576.684 kb on + strand at 1576.724 kb on + strand at 1576.732 kb on - strand at 1576.734 kb on + strand at 1576.763 kb on - strand at 1576.782 kb on - strand at 1576.975 kb on - strand, within PGA1_c15160 at 1577.003 kb on + strand, within PGA1_c15160 at 1577.070 kb on + strand, within PGA1_c15160 at 1577.070 kb on + strand, within PGA1_c15160 at 1577.078 kb on - strand, within PGA1_c15160 at 1577.078 kb on - strand, within PGA1_c15160 at 1577.129 kb on + strand, within PGA1_c15160 at 1577.142 kb on - strand, within PGA1_c15160 at 1577.230 kb on + strand, within PGA1_c15160 at 1577.230 kb on + strand, within PGA1_c15160 at 1577.230 kb on + strand, within PGA1_c15160 at 1577.230 kb on + strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.238 kb on - strand, within PGA1_c15160 at 1577.288 kb on + strand, within PGA1_c15160 at 1577.394 kb on - strand, within PGA1_c15160
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,576,014 + -0.1 1,576,014 + +0.3 1,576,022 - -1.0 1,576,022 - +0.4 1,576,055 + -1.1 1,576,085 + -0.3 1,576,093 - +0.1 1,576,093 - +0.2 1,576,103 - -0.4 1,576,104 - +0.4 1,576,109 + -0.8 1,576,117 - -0.2 1,576,117 - +0.2 1,576,166 + PGA1_c15150 0.14 -1.5 1,576,169 - PGA1_c15150 0.16 +0.2 1,576,174 - PGA1_c15150 0.17 +0.4 1,576,174 - PGA1_c15150 0.17 -0.1 1,576,179 - PGA1_c15150 0.19 +0.8 1,576,181 - PGA1_c15150 0.20 +0.2 1,576,184 - PGA1_c15150 0.21 +1.7 1,576,191 + PGA1_c15150 0.24 +0.4 1,576,214 + PGA1_c15150 0.32 +0.5 1,576,222 - PGA1_c15150 0.35 +0.8 1,576,239 + PGA1_c15150 0.41 +0.3 1,576,284 + PGA1_c15150 0.58 +0.1 1,576,284 + PGA1_c15150 0.58 +0.4 1,576,292 - PGA1_c15150 0.61 +1.0 1,576,326 + PGA1_c15150 0.74 -0.6 1,576,334 - PGA1_c15150 0.77 -0.5 1,576,369 + PGA1_c15150 0.90 +0.2 1,576,369 + PGA1_c15150 0.90 -0.1 1,576,369 + PGA1_c15150 0.90 +0.7 1,576,369 + PGA1_c15150 0.90 +0.4 1,576,369 + PGA1_c15150 0.90 +0.5 1,576,369 + PGA1_c15150 0.90 -0.2 1,576,377 - +0.4 1,576,377 - +1.3 1,576,377 - -1.3 1,576,377 - -0.2 1,576,377 - +0.2 1,576,387 - +2.5 1,576,452 + -0.9 1,576,459 + +0.1 1,576,459 + +0.5 1,576,460 - -0.5 1,576,465 - +0.7 1,576,465 - -0.6 1,576,465 - +0.5 1,576,467 - -0.6 1,576,490 - -0.3 1,576,525 - -0.3 1,576,570 - +0.6 1,576,581 + -0.1 1,576,637 - -1.4 1,576,684 + -0.7 1,576,724 + +0.2 1,576,732 - +0.5 1,576,734 + +0.2 1,576,763 - -1.1 1,576,782 - -0.6 1,576,975 - PGA1_c15160 0.21 -0.1 1,577,003 + PGA1_c15160 0.23 -1.5 1,577,070 + PGA1_c15160 0.27 -1.1 1,577,070 + PGA1_c15160 0.27 -0.5 1,577,078 - PGA1_c15160 0.28 +0.8 1,577,078 - PGA1_c15160 0.28 -1.7 1,577,129 + PGA1_c15160 0.31 -0.8 1,577,142 - PGA1_c15160 0.32 -0.1 1,577,230 + PGA1_c15160 0.38 -0.3 1,577,230 + PGA1_c15160 0.38 +0.7 1,577,230 + PGA1_c15160 0.38 -0.5 1,577,230 + PGA1_c15160 0.38 -1.1 1,577,238 - PGA1_c15160 0.39 +1.6 1,577,238 - PGA1_c15160 0.39 -0.6 1,577,238 - PGA1_c15160 0.39 -1.0 1,577,238 - PGA1_c15160 0.39 -0.4 1,577,238 - PGA1_c15160 0.39 +0.1 1,577,238 - PGA1_c15160 0.39 -0.6 1,577,238 - PGA1_c15160 0.39 -0.0 1,577,288 + PGA1_c15160 0.42 +0.5 1,577,394 - PGA1_c15160 0.49 -0.6
Or see this region's nucleotide sequence