Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15080 and PGA1_c15090 are separated by 68 nucleotides PGA1_c15090 and PGA1_c15100 are separated by 207 nucleotides PGA1_c15100 and PGA1_c15110 are separated by 91 nucleotides
PGA1_c15080: PGA1_c15080 - Hydrogenase/urease accessory protein, at 1,567,019 to 1,568,227
_c15080
PGA1_c15090: PGA1_c15090 - putative thiamine monophosphate synthase, at 1,568,296 to 1,568,931
_c15090
PGA1_c15100: PGA1_c15100 - tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ, at 1,569,139 to 1,569,885
_c15100
PGA1_c15110: PGA1_c15110 - heme A synthase CtaA, at 1,569,977 to 1,571,125
_c15110
Position (kb)
1569
1570 Strain fitness (log2 ratio)
-1
0
1 at 1568.178 kb on + strand at 1568.183 kb on + strand at 1568.203 kb on - strand at 1568.203 kb on - strand at 1568.226 kb on + strand at 1568.226 kb on + strand at 1568.280 kb on - strand at 1568.285 kb on - strand at 1568.990 kb on + strand at 1569.083 kb on + strand at 1569.083 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on + strand at 1569.091 kb on - strand at 1569.099 kb on - strand at 1569.101 kb on + strand at 1569.106 kb on + strand at 1569.108 kb on + strand at 1569.164 kb on + strand at 1569.279 kb on + strand, within PGA1_c15100 at 1569.287 kb on - strand, within PGA1_c15100 at 1569.425 kb on - strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.469 kb on + strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.587 kb on - strand, within PGA1_c15100 at 1569.691 kb on + strand, within PGA1_c15100 at 1569.779 kb on - strand, within PGA1_c15100 at 1569.808 kb on + strand, within PGA1_c15100 at 1569.818 kb on + strand at 1569.892 kb on + strand at 1569.910 kb on - strand at 1569.913 kb on + strand at 1569.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,568,178 + +0.5 1,568,183 + +0.1 1,568,203 - +0.6 1,568,203 - -0.6 1,568,226 + +1.5 1,568,226 + -0.2 1,568,280 - +0.8 1,568,285 - +0.3 1,568,990 + -0.5 1,569,083 + +1.3 1,569,083 + +0.4 1,569,091 + -0.4 1,569,091 + +0.0 1,569,091 - -0.6 1,569,099 - -0.7 1,569,101 + -0.3 1,569,106 + -0.7 1,569,108 + +0.5 1,569,164 + -0.7 1,569,279 + PGA1_c15100 0.19 +0.3 1,569,287 - PGA1_c15100 0.20 -0.2 1,569,425 - PGA1_c15100 0.38 +0.9 1,569,469 + PGA1_c15100 0.44 +0.8 1,569,469 + PGA1_c15100 0.44 +1.1 1,569,587 - PGA1_c15100 0.60 +0.6 1,569,587 - PGA1_c15100 0.60 +0.9 1,569,691 + PGA1_c15100 0.74 -0.2 1,569,779 - PGA1_c15100 0.86 -1.1 1,569,808 + PGA1_c15100 0.90 -0.2 1,569,818 + -0.8 1,569,892 + +1.1 1,569,910 - -0.3 1,569,913 + +0.6 1,569,923 + +0.7
Or see this region's nucleotide sequence