Experiment: MoLS4 with N2 gas (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0144 and DORF2315 are separated by 499 nucleotides DORF2315 and DVUA0145 are separated by 25 nucleotides DVUA0145 and DVUAs01 overlap by 1272 nucleotides DVUAs01 and DVUA0146 are separated by 847 nucleotides
DVUA0144: DVUA0144 - hypothetical protein (TIGR), at 186,548 to 186,691
DVUA0144
DORF2315: DORF2315 - no description, at 187,191 to 187,322
DORF2315
DVUA0145: DVUA0145 - conserved domain protein (TIGR), at 187,348 to 191,274
DVUA0145
DVUAs01: DVUAs01 - no description, at 190,003 to 190,437
DVUAs01
DVUA0146: DVUA0146 - hypothetical protein (TIGR), at 191,285 to 191,755
DVUA0146
Position (kb) 187
188
189
190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.370 kb on - strand at 186.466 kb on + strand at 186.497 kb on + strand at 186.527 kb on + strand at 186.547 kb on - strand at 186.629 kb on + strand, within DVUA0144 at 186.631 kb on + strand, within DVUA0144 at 186.699 kb on + strand at 186.726 kb on - strand at 186.735 kb on + strand at 186.759 kb on + strand at 186.773 kb on - strand at 186.787 kb on + strand at 186.805 kb on - strand at 186.845 kb on + strand at 186.850 kb on + strand at 186.858 kb on - strand at 186.920 kb on + strand at 186.975 kb on + strand at 186.977 kb on - strand at 187.014 kb on + strand at 187.099 kb on - strand at 187.109 kb on - strand at 187.288 kb on - strand, within DORF2315 at 187.294 kb on + strand, within DORF2315 at 187.358 kb on + strand at 187.405 kb on - strand at 187.416 kb on + strand at 187.530 kb on - strand at 187.541 kb on - strand at 187.630 kb on - strand at 187.675 kb on - strand at 187.707 kb on + strand at 187.840 kb on - strand, within DVUA0145 at 187.846 kb on + strand, within DVUA0145 at 187.935 kb on + strand, within DVUA0145 at 187.935 kb on + strand, within DVUA0145 at 187.943 kb on - strand, within DVUA0145 at 187.955 kb on + strand, within DVUA0145 at 188.057 kb on - strand, within DVUA0145 at 188.065 kb on - strand, within DVUA0145 at 188.070 kb on - strand, within DVUA0145 at 188.072 kb on + strand, within DVUA0145 at 188.169 kb on - strand, within DVUA0145 at 188.212 kb on + strand, within DVUA0145 at 188.212 kb on + strand, within DVUA0145 at 188.220 kb on - strand, within DVUA0145 at 188.220 kb on - strand, within DVUA0145 at 188.302 kb on + strand, within DVUA0145 at 188.310 kb on - strand, within DVUA0145 at 188.314 kb on + strand, within DVUA0145 at 188.314 kb on + strand, within DVUA0145 at 188.335 kb on - strand, within DVUA0145 at 188.472 kb on - strand, within DVUA0145 at 188.483 kb on - strand, within DVUA0145 at 188.533 kb on + strand, within DVUA0145 at 188.573 kb on + strand, within DVUA0145 at 188.579 kb on - strand, within DVUA0145 at 188.670 kb on + strand, within DVUA0145 at 188.678 kb on + strand, within DVUA0145 at 188.678 kb on - strand, within DVUA0145 at 188.701 kb on + strand, within DVUA0145 at 188.728 kb on - strand, within DVUA0145 at 188.741 kb on + strand, within DVUA0145 at 188.826 kb on + strand, within DVUA0145 at 188.826 kb on + strand, within DVUA0145 at 188.827 kb on - strand, within DVUA0145 at 188.852 kb on + strand, within DVUA0145 at 188.857 kb on + strand, within DVUA0145 at 188.872 kb on + strand, within DVUA0145 at 188.962 kb on + strand, within DVUA0145 at 189.017 kb on - strand, within DVUA0145 at 189.048 kb on + strand, within DVUA0145 at 189.056 kb on - strand, within DVUA0145 at 189.063 kb on - strand, within DVUA0145 at 189.076 kb on - strand, within DVUA0145 at 189.078 kb on + strand, within DVUA0145 at 189.124 kb on - strand, within DVUA0145 at 189.127 kb on + strand, within DVUA0145 at 189.127 kb on + strand, within DVUA0145 at 189.156 kb on - strand, within DVUA0145 at 189.187 kb on - strand, within DVUA0145 at 189.245 kb on + strand, within DVUA0145 at 189.470 kb on - strand, within DVUA0145 at 189.548 kb on - strand, within DVUA0145 at 189.553 kb on + strand, within DVUA0145 at 189.556 kb on - strand, within DVUA0145 at 189.591 kb on + strand, within DVUA0145 at 189.607 kb on + strand, within DVUA0145 at 189.610 kb on - strand, within DVUA0145 at 189.712 kb on + strand, within DVUA0145 at 189.750 kb on + strand, within DVUA0145 at 189.758 kb on - strand, within DVUA0145 at 189.800 kb on - strand, within DVUA0145 at 189.803 kb on + strand, within DVUA0145 at 189.811 kb on - strand, within DVUA0145 at 189.905 kb on - strand, within DVUA0145 at 190.041 kb on - strand at 190.084 kb on + strand at 190.090 kb on + strand at 190.113 kb on + strand at 190.120 kb on + strand at 190.120 kb on + strand at 190.128 kb on - strand at 190.149 kb on - strand at 190.238 kb on + strand at 190.299 kb on + strand at 190.307 kb on - strand at 190.335 kb on - strand at 190.340 kb on - strand at 190.341 kb on - strand at 190.366 kb on - strand at 190.398 kb on + strand at 190.404 kb on - strand at 190.443 kb on + strand, within DVUA0145 at 190.461 kb on - strand, within DVUA0145 at 190.539 kb on - strand, within DVUA0145 at 190.623 kb on - strand, within DVUA0145 at 190.627 kb on + strand, within DVUA0145 at 190.666 kb on + strand, within DVUA0145 at 190.674 kb on - strand, within DVUA0145 at 190.679 kb on - strand, within DVUA0145 at 190.689 kb on - strand, within DVUA0145 at 190.694 kb on - strand, within DVUA0145 at 190.796 kb on - strand, within DVUA0145 at 190.809 kb on + strand, within DVUA0145 at 190.812 kb on - strand, within DVUA0145 at 190.865 kb on - strand, within DVUA0145 at 190.865 kb on - strand, within DVUA0145 at 190.876 kb on - strand, within DVUA0145 at 190.963 kb on + strand at 190.997 kb on + strand at 191.005 kb on - strand at 191.005 kb on - strand at 191.067 kb on + strand at 191.107 kb on + strand at 191.107 kb on + strand at 191.133 kb on - strand at 191.202 kb on + strand at 191.284 kb on - strand at 191.333 kb on + strand, within DVUA0146 at 191.347 kb on - strand, within DVUA0146 at 191.399 kb on - strand, within DVUA0146 at 191.399 kb on - strand, within DVUA0146 at 191.458 kb on + strand, within DVUA0146 at 191.541 kb on - strand, within DVUA0146 at 191.599 kb on - strand, within DVUA0146 at 191.674 kb on + strand, within DVUA0146 at 191.682 kb on - strand, within DVUA0146 at 191.731 kb on + strand at 191.744 kb on + strand at 191.776 kb on + strand at 191.844 kb on + strand at 191.844 kb on + strand at 191.862 kb on - strand at 191.886 kb on - strand at 191.891 kb on + strand at 191.926 kb on + strand at 191.937 kb on - strand at 191.946 kb on + strand at 191.948 kb on - strand at 192.005 kb on + strand at 192.127 kb on + strand at 192.140 kb on + strand at 192.185 kb on - strand at 192.214 kb on + strand at 192.216 kb on + strand at 192.254 kb on + strand at 192.266 kb on + strand at 192.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) remove 186,370 - -1.9 186,466 + -2.5 186,497 + -3.1 186,527 + -2.1 186,547 - -2.3 186,629 + DVUA0144 0.56 +0.6 186,631 + DVUA0144 0.58 -0.0 186,699 + -1.6 186,726 - +0.2 186,735 + +0.2 186,759 + +0.3 186,773 - +0.3 186,787 + -0.1 186,805 - -0.1 186,845 + -2.8 186,850 + -0.3 186,858 - -0.1 186,920 + -0.2 186,975 + -0.5 186,977 - -1.3 187,014 + -0.0 187,099 - +0.5 187,109 - +0.6 187,288 - DORF2315 0.73 +0.7 187,294 + DORF2315 0.78 -0.3 187,358 + -0.8 187,405 - -0.6 187,416 + +0.5 187,530 - -0.7 187,541 - -0.3 187,630 - +0.8 187,675 - +0.2 187,707 + +0.0 187,840 - DVUA0145 0.13 -0.1 187,846 + DVUA0145 0.13 +0.4 187,935 + DVUA0145 0.15 -0.1 187,935 + DVUA0145 0.15 -0.6 187,943 - DVUA0145 0.15 -0.2 187,955 + DVUA0145 0.15 +0.9 188,057 - DVUA0145 0.18 -1.5 188,065 - DVUA0145 0.18 -0.1 188,070 - DVUA0145 0.18 +0.0 188,072 + DVUA0145 0.18 -0.4 188,169 - DVUA0145 0.21 +0.1 188,212 + DVUA0145 0.22 -0.1 188,212 + DVUA0145 0.22 +0.0 188,220 - DVUA0145 0.22 -0.7 188,220 - DVUA0145 0.22 +1.3 188,302 + DVUA0145 0.24 +0.2 188,310 - DVUA0145 0.24 +0.1 188,314 + DVUA0145 0.25 +1.0 188,314 + DVUA0145 0.25 +0.3 188,335 - DVUA0145 0.25 +0.2 188,472 - DVUA0145 0.29 +0.5 188,483 - DVUA0145 0.29 +0.2 188,533 + DVUA0145 0.30 -0.2 188,573 + DVUA0145 0.31 -0.5 188,579 - DVUA0145 0.31 +1.1 188,670 + DVUA0145 0.34 +0.6 188,678 + DVUA0145 0.34 +0.6 188,678 - DVUA0145 0.34 +0.1 188,701 + DVUA0145 0.34 +0.2 188,728 - DVUA0145 0.35 -0.1 188,741 + DVUA0145 0.35 +0.2 188,826 + DVUA0145 0.38 -0.4 188,826 + DVUA0145 0.38 -0.3 188,827 - DVUA0145 0.38 +0.3 188,852 + DVUA0145 0.38 -1.4 188,857 + DVUA0145 0.38 +0.3 188,872 + DVUA0145 0.39 +0.0 188,962 + DVUA0145 0.41 -1.3 189,017 - DVUA0145 0.43 -0.1 189,048 + DVUA0145 0.43 -0.0 189,056 - DVUA0145 0.43 -0.1 189,063 - DVUA0145 0.44 +0.0 189,076 - DVUA0145 0.44 +0.8 189,078 + DVUA0145 0.44 +2.2 189,124 - DVUA0145 0.45 -0.5 189,127 + DVUA0145 0.45 +0.4 189,127 + DVUA0145 0.45 +0.0 189,156 - DVUA0145 0.46 +0.1 189,187 - DVUA0145 0.47 +0.2 189,245 + DVUA0145 0.48 +1.5 189,470 - DVUA0145 0.54 -0.2 189,548 - DVUA0145 0.56 -0.0 189,553 + DVUA0145 0.56 +0.1 189,556 - DVUA0145 0.56 +0.2 189,591 + DVUA0145 0.57 +0.1 189,607 + DVUA0145 0.58 +0.1 189,610 - DVUA0145 0.58 +1.4 189,712 + DVUA0145 0.60 -0.1 189,750 + DVUA0145 0.61 +0.4 189,758 - DVUA0145 0.61 +0.1 189,800 - DVUA0145 0.62 +0.2 189,803 + DVUA0145 0.63 -0.2 189,811 - DVUA0145 0.63 +0.3 189,905 - DVUA0145 0.65 -0.1 190,041 - +0.8 190,084 + +0.3 190,090 + -0.3 190,113 + -0.2 190,120 + +0.1 190,120 + +0.1 190,128 - -0.3 190,149 - -0.1 190,238 + +0.1 190,299 + +0.1 190,307 - +0.2 190,335 - +0.2 190,340 - -0.0 190,341 - +0.2 190,366 - -0.1 190,398 + -2.7 190,404 - -0.1 190,443 + DVUA0145 0.79 +0.3 190,461 - DVUA0145 0.79 -0.1 190,539 - DVUA0145 0.81 +0.8 190,623 - DVUA0145 0.83 -0.1 190,627 + DVUA0145 0.83 +0.8 190,666 + DVUA0145 0.84 +0.6 190,674 - DVUA0145 0.85 -0.3 190,679 - DVUA0145 0.85 +0.4 190,689 - DVUA0145 0.85 -0.1 190,694 - DVUA0145 0.85 +0.4 190,796 - DVUA0145 0.88 +0.8 190,809 + DVUA0145 0.88 -0.1 190,812 - DVUA0145 0.88 +0.8 190,865 - DVUA0145 0.90 -0.1 190,865 - DVUA0145 0.90 -2.2 190,876 - DVUA0145 0.90 +0.2 190,963 + +0.1 190,997 + -0.1 191,005 - +1.2 191,005 - -1.4 191,067 + -1.0 191,107 + -2.3 191,107 + +0.1 191,133 - -0.6 191,202 + -1.0 191,284 - -0.2 191,333 + DVUA0146 0.10 +0.7 191,347 - DVUA0146 0.13 -0.1 191,399 - DVUA0146 0.24 -0.1 191,399 - DVUA0146 0.24 +0.2 191,458 + DVUA0146 0.37 -0.7 191,541 - DVUA0146 0.54 +0.8 191,599 - DVUA0146 0.67 -1.0 191,674 + DVUA0146 0.83 -0.4 191,682 - DVUA0146 0.84 -1.0 191,731 + -0.1 191,744 + -0.1 191,776 + +0.4 191,844 + +0.2 191,844 + -0.4 191,862 - +1.4 191,886 - -0.3 191,891 + -0.7 191,926 + -0.4 191,937 - +0.5 191,946 + +0.1 191,948 - -0.2 192,005 + -0.5 192,127 + -0.1 192,140 + -0.5 192,185 - +0.2 192,214 + -1.2 192,216 + +0.5 192,254 + -3.2 192,266 + -0.3 192,274 - +0.8
Or see this region's nucleotide sequence