Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3646

Experiment: BHIS with Sulfamonomethoxine 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3645 and BT3646 are separated by 127 nucleotidesBT3646 and BT3647 are separated by 152 nucleotidesBT3647 and BT3648 are separated by 18 nucleotides BT3645: BT3645 - two-component system sensor histidine kinase (NCBI ptt file), at 4,722,402 to 4,724,417 BT3645 BT3646: BT3646 - dihydropteroate synthase (NCBI ptt file), at 4,724,545 to 4,725,408 BT3646 BT3647: BT3647 - conserved hypothetical protein (NCBI ptt file), at 4,725,561 to 4,726,247 BT3647 BT3648: BT3648 - putative modulator of DNA gyrase (NCBI ptt file), at 4,726,266 to 4,727,807 BT3648 Position (kb) 4724 4725 4726Strain fitness (log2 ratio) -3 -2 -1 0 1at 4723.688 kb on - strand, within BT3645at 4723.690 kb on + strand, within BT3645at 4723.695 kb on + strand, within BT3645at 4723.696 kb on - strand, within BT3645at 4723.699 kb on + strand, within BT3645at 4723.700 kb on - strand, within BT3645at 4723.700 kb on - strand, within BT3645at 4723.700 kb on - strand, within BT3645at 4723.721 kb on + strand, within BT3645at 4723.823 kb on + strand, within BT3645at 4723.824 kb on - strand, within BT3645at 4723.824 kb on - strand, within BT3645at 4723.845 kb on + strand, within BT3645at 4723.948 kb on + strand, within BT3645at 4724.008 kb on + strand, within BT3645at 4724.046 kb on + strand, within BT3645at 4724.047 kb on - strand, within BT3645at 4724.047 kb on - strand, within BT3645at 4724.120 kb on + strand, within BT3645at 4724.167 kb on + strand, within BT3645at 4724.167 kb on + strand, within BT3645at 4724.171 kb on - strand, within BT3645at 4724.193 kb on + strand, within BT3645at 4724.325 kb on - strandat 4724.449 kb on + strandat 4724.465 kb on - strandat 4724.484 kb on - strandat 4724.534 kb on + strandat 4725.455 kb on + strandat 4725.455 kb on + strandat 4725.468 kb on + strandat 4726.298 kb on + strandat 4726.298 kb on + strandat 4726.299 kb on - strandat 4726.300 kb on + strandat 4726.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Sulfamonomethoxine 0.2 mM
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4,723,688 - BT3645 0.64 -1.3
4,723,690 + BT3645 0.64 +1.3
4,723,695 + BT3645 0.64 -0.5
4,723,696 - BT3645 0.64 -2.3
4,723,699 + BT3645 0.64 -1.5
4,723,700 - BT3645 0.64 -0.9
4,723,700 - BT3645 0.64 -0.9
4,723,700 - BT3645 0.64 -1.3
4,723,721 + BT3645 0.65 -1.2
4,723,823 + BT3645 0.70 -2.3
4,723,824 - BT3645 0.71 -1.5
4,723,824 - BT3645 0.71 +1.4
4,723,845 + BT3645 0.72 -1.4
4,723,948 + BT3645 0.77 -1.5
4,724,008 + BT3645 0.80 +0.1
4,724,046 + BT3645 0.82 -1.9
4,724,047 - BT3645 0.82 -0.9
4,724,047 - BT3645 0.82 -2.3
4,724,120 + BT3645 0.85 -1.9
4,724,167 + BT3645 0.88 +0.1
4,724,167 + BT3645 0.88 -1.6
4,724,171 - BT3645 0.88 -2.3
4,724,193 + BT3645 0.89 -2.5
4,724,325 - +0.3
4,724,449 + -2.5
4,724,465 - -1.2
4,724,484 - -2.9
4,724,534 + -1.5
4,725,455 + -3.6
4,725,455 + -0.7
4,725,468 + -2.3
4,726,298 + -0.9
4,726,298 + +1.1
4,726,299 - +0.6
4,726,300 + +1.4
4,726,301 - -0.5

Or see this region's nucleotide sequence