Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0317

Experiment: BHIS with Sulfamonomethoxine 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0316 and BT0317 are separated by 312 nucleotidesBT0317 and BT0318 are separated by 19 nucleotides BT0316: BT0316 - putative hemin receptor (NCBI ptt file), at 380,228 to 381,832 BT0316 BT0317: BT0317 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 382,145 to 385,333 BT0317 BT0318: BT0318 - hypothetical protein (NCBI ptt file), at 385,353 to 386,567 BT0318 Position (kb) 382 383 384 385 386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 381.185 kb on - strand, within BT0316at 381.223 kb on + strand, within BT0316at 381.236 kb on + strand, within BT0316at 381.236 kb on + strand, within BT0316at 381.237 kb on - strand, within BT0316at 381.238 kb on + strand, within BT0316at 381.239 kb on - strand, within BT0316at 381.347 kb on + strand, within BT0316at 381.349 kb on + strand, within BT0316at 381.365 kb on + strand, within BT0316at 381.367 kb on + strand, within BT0316at 381.371 kb on + strand, within BT0316at 381.372 kb on - strand, within BT0316at 381.433 kb on + strand, within BT0316at 381.555 kb on + strand, within BT0316at 381.562 kb on + strand, within BT0316at 381.566 kb on + strand, within BT0316at 381.567 kb on - strand, within BT0316at 381.567 kb on - strand, within BT0316at 381.659 kb on - strand, within BT0316at 381.666 kb on - strand, within BT0316at 381.667 kb on + strand, within BT0316at 381.716 kb on + strandat 381.722 kb on + strandat 381.722 kb on + strandat 381.723 kb on - strandat 381.731 kb on + strandat 381.731 kb on + strandat 381.731 kb on + strandat 381.790 kb on + strandat 381.790 kb on + strandat 381.796 kb on + strandat 381.873 kb on + strandat 381.937 kb on - strandat 382.145 kb on - strandat 382.168 kb on - strandat 382.271 kb on - strandat 382.337 kb on - strandat 382.468 kb on + strand, within BT0317at 382.469 kb on - strand, within BT0317at 382.473 kb on + strand, within BT0317at 382.506 kb on + strand, within BT0317at 382.526 kb on - strand, within BT0317at 382.763 kb on - strand, within BT0317at 382.799 kb on - strand, within BT0317at 382.916 kb on - strand, within BT0317at 382.988 kb on + strand, within BT0317at 383.095 kb on - strand, within BT0317at 383.136 kb on - strand, within BT0317at 383.141 kb on + strand, within BT0317at 383.172 kb on - strand, within BT0317at 383.229 kb on + strand, within BT0317at 383.230 kb on - strand, within BT0317at 383.271 kb on + strand, within BT0317at 383.322 kb on - strand, within BT0317at 383.346 kb on + strand, within BT0317at 383.364 kb on - strand, within BT0317at 383.367 kb on + strand, within BT0317at 383.381 kb on - strand, within BT0317at 383.381 kb on - strand, within BT0317at 383.381 kb on - strand, within BT0317at 383.413 kb on + strand, within BT0317at 383.436 kb on - strand, within BT0317at 383.436 kb on - strand, within BT0317at 383.575 kb on + strand, within BT0317at 383.630 kb on - strand, within BT0317at 383.677 kb on + strand, within BT0317at 383.678 kb on - strand, within BT0317at 383.740 kb on + strand, within BT0317at 383.741 kb on - strand, within BT0317at 383.784 kb on - strand, within BT0317at 383.924 kb on - strand, within BT0317at 383.945 kb on + strand, within BT0317at 383.945 kb on + strand, within BT0317at 383.946 kb on - strand, within BT0317at 383.990 kb on - strand, within BT0317at 384.024 kb on + strand, within BT0317at 384.073 kb on + strand, within BT0317at 384.081 kb on - strand, within BT0317at 384.146 kb on - strand, within BT0317at 384.170 kb on + strand, within BT0317at 384.230 kb on - strand, within BT0317at 384.256 kb on - strand, within BT0317at 384.269 kb on - strand, within BT0317at 384.512 kb on - strand, within BT0317at 384.535 kb on + strand, within BT0317at 384.536 kb on - strand, within BT0317at 384.614 kb on - strand, within BT0317at 384.643 kb on + strand, within BT0317at 384.644 kb on - strand, within BT0317at 384.661 kb on + strand, within BT0317at 384.662 kb on - strand, within BT0317at 384.662 kb on - strand, within BT0317at 384.688 kb on - strand, within BT0317at 384.790 kb on + strandat 384.791 kb on - strand, within BT0317at 384.824 kb on + strand, within BT0317at 384.902 kb on + strand, within BT0317at 384.979 kb on - strand, within BT0317at 384.991 kb on + strand, within BT0317at 385.048 kb on + strandat 385.083 kb on - strandat 385.162 kb on + strandat 385.162 kb on + strandat 385.164 kb on + strandat 385.207 kb on + strandat 385.208 kb on - strandat 385.251 kb on - strandat 385.318 kb on - strandat 385.325 kb on - strandat 385.344 kb on - strandat 385.370 kb on - strandat 385.371 kb on + strandat 385.376 kb on - strandat 385.445 kb on + strandat 385.475 kb on + strand, within BT0318at 385.507 kb on + strand, within BT0318at 385.564 kb on + strand, within BT0318at 385.571 kb on + strand, within BT0318at 385.607 kb on + strand, within BT0318at 385.608 kb on - strand, within BT0318at 385.623 kb on + strand, within BT0318at 385.624 kb on - strand, within BT0318at 385.650 kb on + strand, within BT0318at 385.758 kb on + strand, within BT0318at 385.758 kb on + strand, within BT0318at 385.759 kb on - strand, within BT0318at 385.760 kb on + strand, within BT0318at 385.760 kb on + strand, within BT0318at 385.934 kb on + strand, within BT0318at 385.934 kb on + strand, within BT0318at 385.934 kb on + strand, within BT0318at 385.959 kb on + strand, within BT0318at 386.036 kb on - strand, within BT0318at 386.062 kb on + strand, within BT0318at 386.063 kb on - strand, within BT0318at 386.067 kb on - strand, within BT0318at 386.106 kb on - strand, within BT0318at 386.123 kb on + strand, within BT0318at 386.123 kb on + strand, within BT0318at 386.186 kb on + strand, within BT0318at 386.219 kb on - strand, within BT0318

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Sulfamonomethoxine 0.2 mM
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381,185 - BT0316 0.60 -0.5
381,223 + BT0316 0.62 -1.7
381,236 + BT0316 0.63 -2.1
381,236 + BT0316 0.63 -0.1
381,237 - BT0316 0.63 -1.7
381,238 + BT0316 0.63 +1.2
381,239 - BT0316 0.63 -1.7
381,347 + BT0316 0.70 -0.1
381,349 + BT0316 0.70 +0.9
381,365 + BT0316 0.71 -0.7
381,367 + BT0316 0.71 +0.5
381,371 + BT0316 0.71 -1.5
381,372 - BT0316 0.71 -1.1
381,433 + BT0316 0.75 -1.1
381,555 + BT0316 0.83 -2.7
381,562 + BT0316 0.83 -1.0
381,566 + BT0316 0.83 -1.4
381,567 - BT0316 0.83 -1.1
381,567 - BT0316 0.83 -2.6
381,659 - BT0316 0.89 -0.1
381,666 - BT0316 0.90 -1.4
381,667 + BT0316 0.90 -2.6
381,716 + -1.1
381,722 + +0.1
381,722 + -0.8
381,723 - -1.1
381,731 + -1.4
381,731 + -1.1
381,731 + -1.7
381,790 + +0.2
381,790 + -2.6
381,796 + -2.7
381,873 + +2.5
381,937 - -0.1
382,145 - +0.5
382,168 - -1.3
382,271 - -2.6
382,337 - -1.7
382,468 + BT0317 0.10 -2.0
382,469 - BT0317 0.10 +0.8
382,473 + BT0317 0.10 -0.1
382,506 + BT0317 0.11 -0.8
382,526 - BT0317 0.12 +0.3
382,763 - BT0317 0.19 -1.1
382,799 - BT0317 0.21 -3.1
382,916 - BT0317 0.24 -1.1
382,988 + BT0317 0.26 -1.7
383,095 - BT0317 0.30 +0.9
383,136 - BT0317 0.31 -2.1
383,141 + BT0317 0.31 -0.1
383,172 - BT0317 0.32 +0.7
383,229 + BT0317 0.34 -0.1
383,230 - BT0317 0.34 -1.2
383,271 + BT0317 0.35 +1.1
383,322 - BT0317 0.37 -4.3
383,346 + BT0317 0.38 -2.4
383,364 - BT0317 0.38 +0.9
383,367 + BT0317 0.38 -1.6
383,381 - BT0317 0.39 -0.1
383,381 - BT0317 0.39 +1.9
383,381 - BT0317 0.39 +1.9
383,413 + BT0317 0.40 -0.3
383,436 - BT0317 0.40 -0.5
383,436 - BT0317 0.40 -1.1
383,575 + BT0317 0.45 -0.1
383,630 - BT0317 0.47 +0.9
383,677 + BT0317 0.48 +1.9
383,678 - BT0317 0.48 +1.0
383,740 + BT0317 0.50 -0.9
383,741 - BT0317 0.50 +0.9
383,784 - BT0317 0.51 -0.1
383,924 - BT0317 0.56 -0.7
383,945 + BT0317 0.56 -2.1
383,945 + BT0317 0.56 -0.1
383,946 - BT0317 0.56 -3.2
383,990 - BT0317 0.58 +1.5
384,024 + BT0317 0.59 +0.3
384,073 + BT0317 0.60 -1.1
384,081 - BT0317 0.61 -1.7
384,146 - BT0317 0.63 -2.9
384,170 + BT0317 0.63 -1.1
384,230 - BT0317 0.65 -1.2
384,256 - BT0317 0.66 +1.9
384,269 - BT0317 0.67 +1.5
384,512 - BT0317 0.74 +0.7
384,535 + BT0317 0.75 +0.4
384,536 - BT0317 0.75 -1.1
384,614 - BT0317 0.77 -1.7
384,643 + BT0317 0.78 -1.9
384,644 - BT0317 0.78 -2.1
384,661 + BT0317 0.79 -1.1
384,662 - BT0317 0.79 -1.7
384,662 - BT0317 0.79 -1.0
384,688 - BT0317 0.80 -0.7
384,790 + -0.1
384,791 - BT0317 0.83 -1.3
384,824 + BT0317 0.84 -0.1
384,902 + BT0317 0.86 +0.5
384,979 - BT0317 0.89 +0.9
384,991 + BT0317 0.89 -2.9
385,048 + -1.1
385,083 - -1.7
385,162 + -1.1
385,162 + +1.5
385,164 + -0.1
385,207 + +0.9
385,208 - -0.8
385,251 - -1.9
385,318 - -0.1
385,325 - -2.0
385,344 - -0.4
385,370 - -0.3
385,371 + +1.5
385,376 - -0.1
385,445 + -2.9
385,475 + BT0318 0.10 -0.1
385,507 + BT0318 0.13 -2.0
385,564 + BT0318 0.17 -2.4
385,571 + BT0318 0.18 -1.1
385,607 + BT0318 0.21 -0.7
385,608 - BT0318 0.21 -1.6
385,623 + BT0318 0.22 -1.7
385,624 - BT0318 0.22 +0.9
385,650 + BT0318 0.24 -1.2
385,758 + BT0318 0.33 -2.4
385,758 + BT0318 0.33 -2.7
385,759 - BT0318 0.33 -3.4
385,760 + BT0318 0.33 -1.1
385,760 + BT0318 0.33 +0.7
385,934 + BT0318 0.48 -2.4
385,934 + BT0318 0.48 -2.9
385,934 + BT0318 0.48 -1.4
385,959 + BT0318 0.50 -1.5
386,036 - BT0318 0.56 +1.2
386,062 + BT0318 0.58 +0.7
386,063 - BT0318 0.58 +0.9
386,067 - BT0318 0.59 -2.9
386,106 - BT0318 0.62 -1.1
386,123 + BT0318 0.63 -0.9
386,123 + BT0318 0.63 -2.4
386,186 + BT0318 0.69 -0.7
386,219 - BT0318 0.71 -0.4

Or see this region's nucleotide sequence