Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0004

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0003 and DVUA0004 are separated by 354 nucleotidesDVUA0004 and DVUA0005 are separated by 654 nucleotides DVUA0003: DVUA0003 - hypothetical protein (TIGR), at 1,740 to 5,135 DVUA0003 DVUA0004: DVUA0004 - DNA-binding protein HU, putative (TIGR), at 5,490 to 5,843 DVUA0004 DVUA0005: DVUA0005 - universal stress protein family (TIGR), at 6,498 to 7,433 DVUA0005 Position (kb) 5 6Strain fitness (log2 ratio) -1 0 1 2at 5.191 kb on + strandat 5.238 kb on + strandat 5.907 kb on - strandat 5.935 kb on - strandat 5.985 kb on + strandat 6.079 kb on + strandat 6.200 kb on + strandat 6.208 kb on - strandat 6.208 kb on - strandat 6.209 kb on - strandat 6.271 kb on + strandat 6.306 kb on + strandat 6.314 kb on - strandat 6.496 kb on + strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.504 kb on - strandat 6.639 kb on + strand, within DVUA0005at 6.639 kb on - strand, within DVUA0005at 6.647 kb on - strand, within DVUA0005at 6.663 kb on + strand, within DVUA0005at 6.686 kb on + strand, within DVUA0005at 6.716 kb on - strand, within DVUA0005at 6.740 kb on + strand, within DVUA0005at 6.832 kb on + strand, within DVUA0005

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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5,191 + +0.0
5,238 + -1.2
5,907 - -0.3
5,935 - -0.1
5,985 + -0.2
6,079 + -1.1
6,200 + +0.0
6,208 - -0.9
6,208 - -0.9
6,209 - -0.3
6,271 + -0.4
6,306 + -1.1
6,314 - -0.4
6,496 + +0.4
6,504 - +0.2
6,504 - +2.1
6,504 - -1.3
6,504 - -1.6
6,504 - -0.0
6,504 - -0.4
6,639 + DVUA0005 0.15 -0.8
6,639 - DVUA0005 0.15 -0.4
6,647 - DVUA0005 0.16 -0.6
6,663 + DVUA0005 0.18 -1.7
6,686 + DVUA0005 0.20 +0.7
6,716 - DVUA0005 0.23 -0.5
6,740 + DVUA0005 0.26 +1.1
6,832 + DVUA0005 0.36 -0.9

Or see this region's nucleotide sequence