Experiment: MoLS4 with N2 gas (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0077 and cysC are separated by 467 nucleotides cysC and DVUA0080 are separated by 97 nucleotides DVUA0080 and DVUA0081 overlap by 1 nucleotides
DVUA0077: DVUA0077 - ABC transporter, permease protein (TIGR), at 104,230 to 105,114
DVUA0077
DVUA0079: cysC - adenylylsulfate kinase (TIGR), at 105,582 to 106,268
cysC
DVUA0080: DVUA0080 - glycosyl transferase, group 2 family protein (TIGR), at 106,366 to 107,247
DVUA0080
DVUA0081: DVUA0081 - glycosyl transferase, group 1/2 family protein (TIGR), at 107,247 to 109,361
DVUA0081
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-2
-1
0
1 at 104.591 kb on + strand, within DVUA0077 at 105.360 kb on + strand at 105.370 kb on + strand at 105.399 kb on + strand at 105.429 kb on + strand at 105.686 kb on - strand, within cysC at 105.958 kb on + strand, within cysC at 105.974 kb on - strand, within cysC at 105.976 kb on + strand, within cysC at 106.076 kb on - strand, within cysC at 106.173 kb on + strand, within cysC at 106.202 kb on + strand at 106.202 kb on + strand at 106.367 kb on + strand at 106.439 kb on + strand at 106.575 kb on + strand, within DVUA0080 at 106.593 kb on - strand, within DVUA0080 at 106.620 kb on - strand, within DVUA0080 at 106.622 kb on + strand, within DVUA0080 at 107.110 kb on + strand, within DVUA0080
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) remove 104,591 + DVUA0077 0.41 -0.1 105,360 + -0.5 105,370 + -0.5 105,399 + +0.2 105,429 + +0.0 105,686 - cysC DVUA0079 0.15 -2.4 105,958 + cysC DVUA0079 0.55 -0.9 105,974 - cysC DVUA0079 0.57 -1.0 105,976 + cysC DVUA0079 0.57 -1.1 106,076 - cysC DVUA0079 0.72 -1.5 106,173 + cysC DVUA0079 0.86 -1.4 106,202 + +0.1 106,202 + -1.2 106,367 + -1.4 106,439 + -0.8 106,575 + DVUA0080 0.24 -1.8 106,593 - DVUA0080 0.26 -0.1 106,620 - DVUA0080 0.29 -0.5 106,622 + DVUA0080 0.29 -0.4 107,110 + DVUA0080 0.84 +0.1
Or see this region's nucleotide sequence