Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0079

Experiment: MoLS4 with N2 gas (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVUA0077 and cysC are separated by 467 nucleotidescysC and DVUA0080 are separated by 97 nucleotidesDVUA0080 and DVUA0081 overlap by 1 nucleotides DVUA0077: DVUA0077 - ABC transporter, permease protein (TIGR), at 104,230 to 105,114 DVUA0077 DVUA0079: cysC - adenylylsulfate kinase (TIGR), at 105,582 to 106,268 cysC DVUA0080: DVUA0080 - glycosyl transferase, group 2 family protein (TIGR), at 106,366 to 107,247 DVUA0080 DVUA0081: DVUA0081 - glycosyl transferase, group 1/2 family protein (TIGR), at 107,247 to 109,361 DVUA0081 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1at 104.591 kb on + strand, within DVUA0077at 105.360 kb on + strandat 105.370 kb on + strandat 105.399 kb on + strandat 105.429 kb on + strandat 105.686 kb on - strand, within cysCat 105.958 kb on + strand, within cysCat 105.974 kb on - strand, within cysCat 105.976 kb on + strand, within cysCat 106.076 kb on - strand, within cysCat 106.173 kb on + strand, within cysCat 106.202 kb on + strandat 106.202 kb on + strandat 106.367 kb on + strandat 106.439 kb on + strandat 106.575 kb on + strand, within DVUA0080at 106.593 kb on - strand, within DVUA0080at 106.620 kb on - strand, within DVUA0080at 106.622 kb on + strand, within DVUA0080at 107.110 kb on + strand, within DVUA0080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
remove
104,591 + DVUA0077 0.41 -0.1
105,360 + -0.5
105,370 + -0.5
105,399 + +0.2
105,429 + +0.0
105,686 - cysC DVUA0079 0.15 -2.4
105,958 + cysC DVUA0079 0.55 -0.9
105,974 - cysC DVUA0079 0.57 -1.0
105,976 + cysC DVUA0079 0.57 -1.1
106,076 - cysC DVUA0079 0.72 -1.5
106,173 + cysC DVUA0079 0.86 -1.4
106,202 + +0.1
106,202 + -1.2
106,367 + -1.4
106,439 + -0.8
106,575 + DVUA0080 0.24 -1.8
106,593 - DVUA0080 0.26 -0.1
106,620 - DVUA0080 0.29 -0.5
106,622 + DVUA0080 0.29 -0.4
107,110 + DVUA0080 0.84 +0.1

Or see this region's nucleotide sequence