Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0392

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0391 and DVU0392 are separated by 254 nucleotidesDVU0392 and ung are separated by 253 nucleotides DVU0391: DVU0391 - hypothetical protein (TIGR), at 439,115 to 440,056 DVU0391 DVU0392: DVU0392 - aromatic aminotransferase (TIGR), at 440,311 to 441,510 DVU0392 DVU0393: ung - uracil-DNA glycosylase (TIGR), at 441,764 to 442,501 ung Position (kb) 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.359 kb on - strand, within DVU0391at 439.363 kb on + strand, within DVU0391at 439.399 kb on + strand, within DVU0391at 439.404 kb on + strand, within DVU0391at 439.449 kb on - strand, within DVU0391at 439.479 kb on + strand, within DVU0391at 439.479 kb on + strand, within DVU0391at 439.530 kb on - strand, within DVU0391at 439.549 kb on + strand, within DVU0391at 439.665 kb on - strand, within DVU0391at 439.665 kb on - strand, within DVU0391at 439.673 kb on + strand, within DVU0391at 439.806 kb on + strand, within DVU0391at 439.855 kb on + strand, within DVU0391at 439.857 kb on - strand, within DVU0391at 440.024 kb on - strandat 440.030 kb on - strandat 440.066 kb on + strandat 440.093 kb on - strandat 440.105 kb on + strandat 440.133 kb on - strandat 440.303 kb on + strandat 440.339 kb on + strandat 440.417 kb on + strandat 440.421 kb on + strandat 440.443 kb on + strand, within DVU0392at 440.451 kb on - strand, within DVU0392at 440.451 kb on - strand, within DVU0392at 440.489 kb on - strand, within DVU0392at 440.499 kb on + strand, within DVU0392at 440.499 kb on + strand, within DVU0392at 440.507 kb on - strand, within DVU0392at 440.507 kb on - strand, within DVU0392at 440.507 kb on - strand, within DVU0392at 440.507 kb on - strand, within DVU0392at 440.507 kb on - strand, within DVU0392at 440.530 kb on - strand, within DVU0392at 440.568 kb on + strand, within DVU0392at 440.647 kb on + strand, within DVU0392at 440.851 kb on + strand, within DVU0392at 440.851 kb on + strand, within DVU0392at 440.859 kb on - strand, within DVU0392at 440.859 kb on - strand, within DVU0392at 440.913 kb on + strand, within DVU0392at 440.959 kb on + strand, within DVU0392at 440.967 kb on - strand, within DVU0392at 441.097 kb on + strand, within DVU0392at 441.098 kb on - strand, within DVU0392at 441.117 kb on - strand, within DVU0392at 441.117 kb on - strand, within DVU0392at 441.148 kb on - strand, within DVU0392at 441.210 kb on + strand, within DVU0392at 441.210 kb on + strand, within DVU0392at 441.218 kb on - strand, within DVU0392at 441.218 kb on - strand, within DVU0392at 441.260 kb on + strand, within DVU0392at 441.287 kb on - strand, within DVU0392at 441.305 kb on - strand, within DVU0392at 441.332 kb on + strand, within DVU0392at 441.332 kb on + strand, within DVU0392at 441.430 kb on - strandat 441.456 kb on - strandat 441.456 kb on - strandat 441.456 kb on - strandat 441.510 kb on + strandat 441.547 kb on + strandat 441.551 kb on + strandat 441.559 kb on + strandat 441.608 kb on + strandat 441.615 kb on + strandat 441.623 kb on - strandat 441.877 kb on + strand, within ungat 441.898 kb on + strand, within ungat 441.903 kb on + strand, within ungat 441.941 kb on - strand, within ungat 441.955 kb on - strand, within ungat 441.985 kb on - strand, within ungat 441.985 kb on - strand, within ungat 442.073 kb on - strand, within ungat 442.159 kb on + strand, within ungat 442.164 kb on + strand, within ungat 442.202 kb on - strand, within ungat 442.229 kb on - strand, within ungat 442.238 kb on + strand, within ungat 442.245 kb on + strand, within ungat 442.285 kb on + strand, within ungat 442.313 kb on - strand, within ungat 442.364 kb on - strand, within ungat 442.378 kb on - strand, within ungat 442.394 kb on + strand, within ungat 442.401 kb on + strand, within ungat 442.453 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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439,359 - DVU0391 0.26 -0.5
439,363 + DVU0391 0.26 -0.5
439,399 + DVU0391 0.30 -1.0
439,404 + DVU0391 0.31 -0.1
439,449 - DVU0391 0.35 -0.6
439,479 + DVU0391 0.39 +0.7
439,479 + DVU0391 0.39 -2.6
439,530 - DVU0391 0.44 +1.1
439,549 + DVU0391 0.46 +0.5
439,665 - DVU0391 0.58 -3.4
439,665 - DVU0391 0.58 +0.6
439,673 + DVU0391 0.59 -1.9
439,806 + DVU0391 0.73 -0.1
439,855 + DVU0391 0.79 -0.3
439,857 - DVU0391 0.79 -1.5
440,024 - -0.1
440,030 - -1.8
440,066 + -2.4
440,093 - -1.2
440,105 + -3.2
440,133 - +0.1
440,303 + +2.0
440,339 + +1.1
440,417 + +1.0
440,421 + +1.2
440,443 + DVU0392 0.11 +1.1
440,451 - DVU0392 0.12 +1.2
440,451 - DVU0392 0.12 +1.9
440,489 - DVU0392 0.15 +1.7
440,499 + DVU0392 0.16 +1.4
440,499 + DVU0392 0.16 +1.5
440,507 - DVU0392 0.16 +1.3
440,507 - DVU0392 0.16 +1.4
440,507 - DVU0392 0.16 +0.7
440,507 - DVU0392 0.16 +1.1
440,507 - DVU0392 0.16 +1.3
440,530 - DVU0392 0.18 +1.7
440,568 + DVU0392 0.21 +1.2
440,647 + DVU0392 0.28 +1.5
440,851 + DVU0392 0.45 +1.2
440,851 + DVU0392 0.45 +1.1
440,859 - DVU0392 0.46 +1.5
440,859 - DVU0392 0.46 +1.6
440,913 + DVU0392 0.50 +1.2
440,959 + DVU0392 0.54 +1.4
440,967 - DVU0392 0.55 +1.4
441,097 + DVU0392 0.66 +1.1
441,098 - DVU0392 0.66 +1.2
441,117 - DVU0392 0.67 +2.0
441,117 - DVU0392 0.67 +1.7
441,148 - DVU0392 0.70 +2.1
441,210 + DVU0392 0.75 +0.9
441,210 + DVU0392 0.75 +1.9
441,218 - DVU0392 0.76 +1.1
441,218 - DVU0392 0.76 +1.4
441,260 + DVU0392 0.79 +1.0
441,287 - DVU0392 0.81 +1.5
441,305 - DVU0392 0.83 +0.9
441,332 + DVU0392 0.85 +1.3
441,332 + DVU0392 0.85 +1.0
441,430 - +1.3
441,456 - +0.9
441,456 - +1.3
441,456 - +1.4
441,510 + -0.2
441,547 + +0.6
441,551 + +1.8
441,559 + +1.0
441,608 + +1.0
441,615 + +1.0
441,623 - +0.1
441,877 + ung DVU0393 0.15 -0.1
441,898 + ung DVU0393 0.18 +0.0
441,903 + ung DVU0393 0.19 +0.3
441,941 - ung DVU0393 0.24 -1.1
441,955 - ung DVU0393 0.26 +0.5
441,985 - ung DVU0393 0.30 +0.4
441,985 - ung DVU0393 0.30 +0.8
442,073 - ung DVU0393 0.42 +0.4
442,159 + ung DVU0393 0.54 -0.6
442,164 + ung DVU0393 0.54 -0.0
442,202 - ung DVU0393 0.59 +0.5
442,229 - ung DVU0393 0.63 -0.3
442,238 + ung DVU0393 0.64 +1.5
442,245 + ung DVU0393 0.65 -1.2
442,285 + ung DVU0393 0.71 -0.7
442,313 - ung DVU0393 0.74 -2.3
442,364 - ung DVU0393 0.81 +0.2
442,378 - ung DVU0393 0.83 -0.1
442,394 + ung DVU0393 0.85 -0.2
442,401 + ung DVU0393 0.86 -0.0
442,453 + +0.4

Or see this region's nucleotide sequence