Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3190

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3189 and DVU3190 are separated by 131 nucleotidesDVU3190 and rluC are separated by 77 nucleotides DVU3189: DVU3189 - NOL1/NOP2/sun family protein (TIGR), at 3,348,264 to 3,349,559 DVU3189 DVU3190: DVU3190 - hypothetical protein (TIGR), at 3,349,691 to 3,351,358 DVU3190 DVU3191: rluC - ribosomal large subunit pseudouridine synthase C (TIGR), at 3,351,436 to 3,352,608 rluC Position (kb) 3349 3350 3351 3352Strain fitness (log2 ratio) -2 -1 0 1at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.696 kb on - strand, within DVU3189at 3348.802 kb on + strand, within DVU3189at 3348.907 kb on - strand, within DVU3189at 3349.021 kb on - strand, within DVU3189at 3349.021 kb on - strand, within DVU3189at 3349.054 kb on - strand, within DVU3189at 3349.073 kb on + strand, within DVU3189at 3349.240 kb on - strand, within DVU3189at 3349.309 kb on + strand, within DVU3189at 3349.329 kb on - strand, within DVU3189at 3349.359 kb on + strand, within DVU3189at 3349.359 kb on + strand, within DVU3189at 3349.366 kb on + strand, within DVU3189at 3349.516 kb on + strandat 3349.573 kb on + strandat 3351.561 kb on + strand, within rluCat 3351.782 kb on + strand, within rluCat 3351.911 kb on + strand, within rluCat 3351.917 kb on + strand, within rluCat 3351.960 kb on - strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.140 kb on + strand, within rluCat 3352.281 kb on + strand, within rluC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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3,348,696 - DVU3189 0.33 -0.1
3,348,696 - DVU3189 0.33 -0.6
3,348,696 - DVU3189 0.33 -0.3
3,348,696 - DVU3189 0.33 -0.8
3,348,696 - DVU3189 0.33 -1.0
3,348,696 - DVU3189 0.33 -0.8
3,348,696 - DVU3189 0.33 -0.5
3,348,696 - DVU3189 0.33 -0.7
3,348,802 + DVU3189 0.42 -0.5
3,348,907 - DVU3189 0.50 -0.6
3,349,021 - DVU3189 0.58 -0.9
3,349,021 - DVU3189 0.58 -1.9
3,349,054 - DVU3189 0.61 -0.1
3,349,073 + DVU3189 0.62 -1.3
3,349,240 - DVU3189 0.75 -1.3
3,349,309 + DVU3189 0.81 -0.1
3,349,329 - DVU3189 0.82 -0.5
3,349,359 + DVU3189 0.84 -0.4
3,349,359 + DVU3189 0.84 -0.4
3,349,366 + DVU3189 0.85 +0.6
3,349,516 + -0.5
3,349,573 + -0.4
3,351,561 + rluC DVU3191 0.11 +0.1
3,351,782 + rluC DVU3191 0.29 -0.1
3,351,911 + rluC DVU3191 0.40 -0.5
3,351,917 + rluC DVU3191 0.41 -0.2
3,351,960 - rluC DVU3191 0.45 -0.1
3,352,140 + rluC DVU3191 0.60 -0.9
3,352,140 + rluC DVU3191 0.60 -0.3
3,352,281 + rluC DVU3191 0.72 -0.5

Or see this region's nucleotide sequence