Experiment: MoLS4 with N2 gas (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2062 and DVU2063 overlap by 4 nucleotides DVU2063 and fabK are separated by 111 nucleotides
DVU2062: DVU2062 - ATP-dependent DNA helicase, UvrD/REP family (TIGR), at 2,138,236 to 2,141,694
DVU2062
DVU2063: DVU2063 - conserved hypothetical protein (TIGR), at 2,141,691 to 2,144,645
DVU2063
DVU2064: fabK - oxidoreductase, 2-nitropropane dioxygenase family (TIGR), at 2,144,757 to 2,145,878
fabK
Position (kb)
2141
2142
2143
2144
2145 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2140.711 kb on - strand, within DVU2062 at 2140.817 kb on + strand, within DVU2062 at 2140.827 kb on + strand, within DVU2062 at 2140.943 kb on - strand, within DVU2062 at 2141.055 kb on + strand, within DVU2062 at 2141.376 kb on + strand at 2141.408 kb on + strand at 2141.408 kb on + strand at 2141.431 kb on + strand at 2141.436 kb on + strand at 2141.439 kb on - strand at 2141.536 kb on + strand at 2141.566 kb on + strand at 2141.603 kb on - strand at 2141.625 kb on + strand at 2141.625 kb on - strand at 2141.888 kb on + strand at 2142.003 kb on - strand, within DVU2063 at 2142.495 kb on - strand, within DVU2063 at 2142.671 kb on + strand, within DVU2063 at 2142.698 kb on + strand, within DVU2063 at 2143.658 kb on + strand, within DVU2063 at 2143.934 kb on + strand, within DVU2063 at 2144.006 kb on - strand, within DVU2063 at 2144.181 kb on - strand, within DVU2063 at 2144.392 kb on + strand at 2144.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N) remove 2,140,711 - DVU2062 0.72 -0.1 2,140,817 + DVU2062 0.75 -1.8 2,140,827 + DVU2062 0.75 -0.9 2,140,943 - DVU2062 0.78 -2.0 2,141,055 + DVU2062 0.81 -0.1 2,141,376 + -0.5 2,141,408 + -1.3 2,141,408 + +0.1 2,141,431 + -2.6 2,141,436 + +0.6 2,141,439 - -3.2 2,141,536 + -0.7 2,141,566 + -0.0 2,141,603 - -1.8 2,141,625 + -0.4 2,141,625 - -0.1 2,141,888 + -2.0 2,142,003 - DVU2063 0.11 +0.7 2,142,495 - DVU2063 0.27 -2.6 2,142,671 + DVU2063 0.33 +0.7 2,142,698 + DVU2063 0.34 -0.9 2,143,658 + DVU2063 0.67 -1.2 2,143,934 + DVU2063 0.76 -1.3 2,144,006 - DVU2063 0.78 -1.6 2,144,181 - DVU2063 0.84 -1.1 2,144,392 + +1.2 2,144,419 - -2.1
Or see this region's nucleotide sequence