Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1678

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecG and tpiA are separated by 37 nucleotidestpiA and rimI are separated by 19 nucleotidesrimI and idi are separated by 22 nucleotidesidi and suhB overlap by 43 nucleotides DVU1676: secG - preprotein translocase, SecG subunit (TIGR), at 1,755,893 to 1,756,243 secG DVU1677: tpiA - triosephosphate isomerase (TIGR), at 1,756,281 to 1,757,036 tpiA DVU1678: rimI - ribosomal-protein-alanine acetyltransferase (TIGR), at 1,757,056 to 1,757,550 rimI DVU1679: idi - isopentenyl-diphosphate delta-isomerase (TIGR), at 1,757,573 to 1,758,109 idi DVU1680: suhB - inositol-1-monophosphatase (TIGR), at 1,758,067 to 1,758,858 suhB Position (kb) 1757 1758Strain fitness (log2 ratio) -2 -1 0 1 2at 1757.061 kb on - strandat 1757.161 kb on + strand, within rimIat 1757.216 kb on - strand, within rimIat 1757.280 kb on + strand, within rimIat 1757.303 kb on - strand, within rimIat 1757.349 kb on + strand, within rimIat 1757.352 kb on - strand, within rimIat 1757.385 kb on + strand, within rimIat 1757.398 kb on + strand, within rimIat 1757.417 kb on - strand, within rimIat 1757.430 kb on + strand, within rimIat 1757.447 kb on + strand, within rimIat 1757.463 kb on + strand, within rimIat 1757.609 kb on + strandat 1757.609 kb on + strandat 1757.614 kb on + strandat 1757.924 kb on + strand, within idiat 1758.029 kb on - strand, within idiat 1758.056 kb on + strandat 1758.148 kb on + strand, within suhBat 1758.156 kb on - strand, within suhBat 1758.156 kb on - strand, within suhBat 1758.156 kb on - strand, within suhBat 1758.236 kb on - strand, within suhBat 1758.252 kb on - strand, within suhBat 1758.354 kb on - strand, within suhBat 1758.414 kb on + strand, within suhBat 1758.422 kb on - strand, within suhBat 1758.476 kb on + strand, within suhBat 1758.484 kb on + strand, within suhBat 1758.492 kb on - strand, within suhB

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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1,757,061 - -0.1
1,757,161 + rimI DVU1678 0.21 -0.6
1,757,216 - rimI DVU1678 0.32 -0.4
1,757,280 + rimI DVU1678 0.45 -1.4
1,757,303 - rimI DVU1678 0.50 -0.9
1,757,349 + rimI DVU1678 0.59 -0.3
1,757,352 - rimI DVU1678 0.60 -1.0
1,757,385 + rimI DVU1678 0.66 -0.7
1,757,398 + rimI DVU1678 0.69 -0.5
1,757,417 - rimI DVU1678 0.73 -1.6
1,757,430 + rimI DVU1678 0.76 -0.8
1,757,447 + rimI DVU1678 0.79 -1.0
1,757,463 + rimI DVU1678 0.82 -0.3
1,757,609 + -2.0
1,757,609 + -2.5
1,757,614 + -1.2
1,757,924 + idi DVU1679 0.65 -2.2
1,758,029 - idi DVU1679 0.85 -2.3
1,758,056 + -0.3
1,758,148 + suhB DVU1680 0.10 -0.0
1,758,156 - suhB DVU1680 0.11 +0.8
1,758,156 - suhB DVU1680 0.11 -0.8
1,758,156 - suhB DVU1680 0.11 -0.7
1,758,236 - suhB DVU1680 0.21 -0.2
1,758,252 - suhB DVU1680 0.23 -0.2
1,758,354 - suhB DVU1680 0.36 -1.0
1,758,414 + suhB DVU1680 0.44 +0.2
1,758,422 - suhB DVU1680 0.45 +0.5
1,758,476 + suhB DVU1680 0.52 +1.9
1,758,484 + suhB DVU1680 0.53 +0.4
1,758,492 - suhB DVU1680 0.54 -0.3

Or see this region's nucleotide sequence