Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1414

Experiment: MoLS4 with N2 gas (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1413 and DVU1414 are separated by 31 nucleotidesDVU1414 and DVU1415 are separated by 35 nucleotides DVU1413: DVU1413 - conserved hypothetical protein (TIGR), at 1,482,724 to 1,484,016 DVU1413 DVU1414: DVU1414 - sensory box/GGDEF domain/EAL domain protein (TIGR), at 1,484,048 to 1,487,041 DVU1414 DVU1415: DVU1415 - AsmA family protein (TIGR), at 1,487,077 to 1,490,661 DVU1415 Position (kb) 1484 1485 1486 1487 1488Strain fitness (log2 ratio) -2 -1 0 1at 1483.067 kb on - strand, within DVU1413at 1483.101 kb on - strand, within DVU1413at 1483.101 kb on - strand, within DVU1413at 1483.118 kb on - strand, within DVU1413at 1483.175 kb on + strand, within DVU1413at 1483.180 kb on + strand, within DVU1413at 1483.180 kb on + strand, within DVU1413at 1483.214 kb on + strand, within DVU1413at 1483.372 kb on + strand, within DVU1413at 1483.375 kb on - strand, within DVU1413at 1483.411 kb on + strand, within DVU1413at 1483.411 kb on + strand, within DVU1413at 1483.499 kb on + strand, within DVU1413at 1483.547 kb on + strand, within DVU1413at 1483.737 kb on - strand, within DVU1413at 1483.743 kb on + strand, within DVU1413at 1483.845 kb on + strand, within DVU1413at 1483.855 kb on - strand, within DVU1413at 1483.855 kb on - strand, within DVU1413at 1483.876 kb on - strand, within DVU1413at 1483.876 kb on - strand, within DVU1413at 1483.888 kb on - strandat 1483.995 kb on - strandat 1484.033 kb on - strandat 1484.050 kb on + strandat 1484.205 kb on - strandat 1484.224 kb on + strandat 1484.232 kb on + strandat 1484.269 kb on + strandat 1484.277 kb on - strandat 1484.337 kb on + strandat 1484.345 kb on - strandat 1484.435 kb on - strand, within DVU1414at 1484.453 kb on + strand, within DVU1414at 1484.461 kb on - strand, within DVU1414at 1484.461 kb on - strand, within DVU1414at 1484.463 kb on + strand, within DVU1414at 1484.494 kb on - strand, within DVU1414at 1484.532 kb on + strand, within DVU1414at 1484.586 kb on + strand, within DVU1414at 1484.645 kb on - strand, within DVU1414at 1484.800 kb on + strand, within DVU1414at 1484.800 kb on + strand, within DVU1414at 1484.800 kb on - strand, within DVU1414at 1484.822 kb on + strand, within DVU1414at 1484.825 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.830 kb on - strand, within DVU1414at 1484.876 kb on - strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.931 kb on + strand, within DVU1414at 1484.939 kb on - strand, within DVU1414at 1484.939 kb on - strand, within DVU1414at 1485.076 kb on - strand, within DVU1414at 1485.113 kb on - strand, within DVU1414at 1485.117 kb on + strand, within DVU1414at 1485.146 kb on - strand, within DVU1414at 1485.179 kb on + strand, within DVU1414at 1485.189 kb on + strand, within DVU1414at 1485.194 kb on + strand, within DVU1414at 1485.212 kb on + strand, within DVU1414at 1485.223 kb on + strand, within DVU1414at 1485.249 kb on + strand, within DVU1414at 1485.257 kb on - strand, within DVU1414at 1485.257 kb on - strand, within DVU1414at 1485.404 kb on - strand, within DVU1414at 1485.474 kb on + strand, within DVU1414at 1485.534 kb on + strand, within DVU1414at 1485.598 kb on + strand, within DVU1414at 1485.646 kb on + strand, within DVU1414at 1485.646 kb on + strand, within DVU1414at 1485.820 kb on + strand, within DVU1414at 1485.840 kb on + strand, within DVU1414at 1485.841 kb on + strand, within DVU1414at 1485.848 kb on - strand, within DVU1414at 1485.869 kb on - strand, within DVU1414at 1485.874 kb on - strand, within DVU1414at 1485.903 kb on + strand, within DVU1414at 1486.077 kb on - strand, within DVU1414at 1486.119 kb on - strand, within DVU1414at 1486.124 kb on - strand, within DVU1414at 1486.136 kb on - strand, within DVU1414at 1486.154 kb on + strand, within DVU1414at 1486.154 kb on + strand, within DVU1414at 1486.164 kb on + strand, within DVU1414at 1486.172 kb on - strand, within DVU1414at 1486.218 kb on + strand, within DVU1414at 1486.298 kb on - strand, within DVU1414at 1486.322 kb on + strand, within DVU1414at 1486.332 kb on + strand, within DVU1414at 1486.340 kb on - strand, within DVU1414at 1486.515 kb on - strand, within DVU1414at 1486.688 kb on - strand, within DVU1414at 1486.688 kb on - strand, within DVU1414at 1486.712 kb on + strand, within DVU1414at 1486.719 kb on - strand, within DVU1414at 1486.764 kb on - strandat 1486.833 kb on + strandat 1486.891 kb on + strandat 1486.933 kb on - strandat 1487.232 kb on - strandat 1487.272 kb on + strandat 1487.272 kb on + strandat 1487.278 kb on - strandat 1487.278 kb on - strandat 1487.280 kb on - strandat 1487.332 kb on + strandat 1487.385 kb on - strandat 1487.385 kb on - strandat 1487.497 kb on + strand, within DVU1415at 1487.497 kb on + strand, within DVU1415at 1487.498 kb on - strand, within DVU1415at 1487.505 kb on - strand, within DVU1415at 1487.589 kb on - strand, within DVU1415at 1487.589 kb on - strand, within DVU1415at 1487.660 kb on - strand, within DVU1415at 1487.660 kb on - strand, within DVU1415at 1487.696 kb on - strand, within DVU1415at 1487.794 kb on - strand, within DVU1415at 1487.851 kb on + strand, within DVU1415at 1487.874 kb on - strand, within DVU1415at 1487.909 kb on - strand, within DVU1415at 1487.929 kb on - strand, within DVU1415at 1488.020 kb on - strand, within DVU1415

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with N2 gas (N)
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1,483,067 - DVU1413 0.27 +0.8
1,483,101 - DVU1413 0.29 +0.4
1,483,101 - DVU1413 0.29 -1.2
1,483,118 - DVU1413 0.30 +0.1
1,483,175 + DVU1413 0.35 +0.0
1,483,180 + DVU1413 0.35 +0.1
1,483,180 + DVU1413 0.35 -0.3
1,483,214 + DVU1413 0.38 -0.7
1,483,372 + DVU1413 0.50 -0.3
1,483,375 - DVU1413 0.50 +0.3
1,483,411 + DVU1413 0.53 +0.4
1,483,411 + DVU1413 0.53 -0.3
1,483,499 + DVU1413 0.60 +0.1
1,483,547 + DVU1413 0.64 +0.8
1,483,737 - DVU1413 0.78 -1.1
1,483,743 + DVU1413 0.79 -0.1
1,483,845 + DVU1413 0.87 +0.2
1,483,855 - DVU1413 0.87 +0.2
1,483,855 - DVU1413 0.87 +0.5
1,483,876 - DVU1413 0.89 +1.0
1,483,876 - DVU1413 0.89 -0.1
1,483,888 - +0.0
1,483,995 - +0.3
1,484,033 - +0.0
1,484,050 + +0.8
1,484,205 - +0.1
1,484,224 + +0.3
1,484,232 + +0.2
1,484,269 + +1.0
1,484,277 - +0.1
1,484,337 + -0.1
1,484,345 - +0.1
1,484,435 - DVU1414 0.13 +1.1
1,484,453 + DVU1414 0.14 +0.5
1,484,461 - DVU1414 0.14 -0.3
1,484,461 - DVU1414 0.14 +0.3
1,484,463 + DVU1414 0.14 -0.0
1,484,494 - DVU1414 0.15 +0.1
1,484,532 + DVU1414 0.16 +0.1
1,484,586 + DVU1414 0.18 +1.1
1,484,645 - DVU1414 0.20 +1.0
1,484,800 + DVU1414 0.25 +0.5
1,484,800 + DVU1414 0.25 -2.3
1,484,800 - DVU1414 0.25 +0.0
1,484,822 + DVU1414 0.26 +0.2
1,484,825 - DVU1414 0.26 +0.1
1,484,830 - DVU1414 0.26 +0.2
1,484,830 - DVU1414 0.26 -0.4
1,484,830 - DVU1414 0.26 -0.1
1,484,830 - DVU1414 0.26 -0.0
1,484,876 - DVU1414 0.28 +1.0
1,484,931 + DVU1414 0.29 +0.0
1,484,931 + DVU1414 0.29 +0.5
1,484,931 + DVU1414 0.29 +0.1
1,484,939 - DVU1414 0.30 +0.0
1,484,939 - DVU1414 0.30 +1.7
1,485,076 - DVU1414 0.34 +0.2
1,485,113 - DVU1414 0.36 +1.3
1,485,117 + DVU1414 0.36 -0.0
1,485,146 - DVU1414 0.37 +0.5
1,485,179 + DVU1414 0.38 +0.1
1,485,189 + DVU1414 0.38 +0.8
1,485,194 + DVU1414 0.38 +0.6
1,485,212 + DVU1414 0.39 +0.6
1,485,223 + DVU1414 0.39 +0.6
1,485,249 + DVU1414 0.40 -1.3
1,485,257 - DVU1414 0.40 +0.5
1,485,257 - DVU1414 0.40 +0.9
1,485,404 - DVU1414 0.45 +0.2
1,485,474 + DVU1414 0.48 +0.4
1,485,534 + DVU1414 0.50 +1.4
1,485,598 + DVU1414 0.52 +1.0
1,485,646 + DVU1414 0.53 +0.4
1,485,646 + DVU1414 0.53 -0.7
1,485,820 + DVU1414 0.59 +0.2
1,485,840 + DVU1414 0.60 +0.1
1,485,841 + DVU1414 0.60 +0.3
1,485,848 - DVU1414 0.60 +0.1
1,485,869 - DVU1414 0.61 -0.1
1,485,874 - DVU1414 0.61 -0.1
1,485,903 + DVU1414 0.62 +0.2
1,486,077 - DVU1414 0.68 +0.1
1,486,119 - DVU1414 0.69 -0.1
1,486,124 - DVU1414 0.69 -1.1
1,486,136 - DVU1414 0.70 +0.3
1,486,154 + DVU1414 0.70 -0.0
1,486,154 + DVU1414 0.70 +0.3
1,486,164 + DVU1414 0.71 +0.1
1,486,172 - DVU1414 0.71 +0.9
1,486,218 + DVU1414 0.72 -0.1
1,486,298 - DVU1414 0.75 -0.6
1,486,322 + DVU1414 0.76 -1.2
1,486,332 + DVU1414 0.76 -0.0
1,486,340 - DVU1414 0.77 +1.0
1,486,515 - DVU1414 0.82 +0.2
1,486,688 - DVU1414 0.88 +1.0
1,486,688 - DVU1414 0.88 +0.0
1,486,712 + DVU1414 0.89 +0.0
1,486,719 - DVU1414 0.89 +0.1
1,486,764 - -0.2
1,486,833 + +0.2
1,486,891 + +0.3
1,486,933 - -0.7
1,487,232 - -0.2
1,487,272 + +0.4
1,487,272 + -0.1
1,487,278 - +0.8
1,487,278 - -0.4
1,487,280 - +0.8
1,487,332 + -0.5
1,487,385 - -0.2
1,487,385 - +0.1
1,487,497 + DVU1415 0.12 -0.9
1,487,497 + DVU1415 0.12 +0.1
1,487,498 - DVU1415 0.12 +0.1
1,487,505 - DVU1415 0.12 -0.7
1,487,589 - DVU1415 0.14 -0.2
1,487,589 - DVU1415 0.14 +0.3
1,487,660 - DVU1415 0.16 +0.0
1,487,660 - DVU1415 0.16 -0.5
1,487,696 - DVU1415 0.17 +0.8
1,487,794 - DVU1415 0.20 +0.2
1,487,851 + DVU1415 0.22 +0.9
1,487,874 - DVU1415 0.22 -0.8
1,487,909 - DVU1415 0.23 +0.1
1,487,929 - DVU1415 0.24 +0.3
1,488,020 - DVU1415 0.26 -1.7

Or see this region's nucleotide sequence